Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00742 ATGGCGGGTTTATTCTCACTAGGAGGTAGAGGGAACAACAACAACGAAGAGGAAATTCCTCCCCCTCCTGATACCCTATACTGGTATAACAACAAGAATGATGATGTTTCTTCTTATCACCGAGGAGGTGGCTTTGAGCTATGGAACCAACAGCAGTTACAACAGCAACAACAACACTTTATGGGTCAGGGTCCTCCACAACCACGGCCTCTCTTTCACCAAGATCTATACTCCGCCTTGGGTGTTGGACCCAGCAGACCCATATCCGACGATCAGTCATCGTCAAGATCCAGCTTCATGGTGGGAGGAAGCGGGAGTGGAAGCGGTGGAATTAGCTGTCAGGACTGTGGGAACCAAGCTAAAAAGGATTGCCCTCACATGCGGTGCAGAACATGCTGCAAGAGCCGGGGCTTCGATTGCCAGACCCATGTCAAGAGCACATGGGTCCCCGCTTCACGCCGCCGCGAGAGACAGCAGCAACTCTCTGCGTTGCAACAAAACATGGAAACTTCTGGAGACCTTCCCAGAAGGCAGAGAGAAAGAGATCATAATAACCCCACTTCCTCTTCTCCTCTTGCTTGCACTCGCTTGCCTTCTAATCCCTCCTCTTCAGGGTTAGAGGAGGTGAATTTCCCGGCGGTGGTGAGATCTTCTGCGGAGTTCAGGTGCGTACGTGTGAGCTCGATAGATGAGGCGGAAGAGGAGTATGCGTACTCAACTGCTGTCAACATAGGAGGGCATGTGTTCAAAGGGATTTTATATGACTATGGTCCGGAAGGTAACAGTAACTTCTTGGGTGGTGCTGGGGAAAGCTCGTCCACTGGTGTTGGAGGTTTGAACCTCACTACTGGTGCCGTTGTCTCAGAGCCACTCCTTGATCCTTCTTCTTCCTTGTATCCAGCTCCTCTTAACACCTTCATGCCTGGTAGTGGTACGCAATTCTTCCCTCACCCACGATCTTGA 963 0.5109 MAGLFSLGGRGNNNNEEEIPPPPDTLYWYNNKNDDVSSYHRGGGFELWNQQQLQQQQQHFMGQGPPQPRPLFHQDLYSALGVGPSRPISDDQSSSRSSFMVGGSGSGSGGISCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPASRRRERQQQLSALQQNMETSGDLPRRQRERDHNNPTSSSPLACTRLPSNPSSSGLEEVNFPAVVRSSAEFRCVRVSSIDEAEEEYAYSTAVNIGGHVFKGILYDYGPEGNSNFLGGAGESSSTGVGGLNLTTGAVVSEPLLDPSSSLYPAPLNTFMPGSGTQFFPHPRS 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00742 320 NCBIfam putative zinc finger domain, LRP1 type 112 154 IPR006510 -
Vian10g00742 320 MobiDBLite consensus disorder prediction 1 31 - -
Vian10g00742 320 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 304 IPR007818 GO:0003700|GO:0006355
Vian10g00742 320 Pfam Domain of unknown function (DUF702) 110 259 - -
Vian10g00742 320 MobiDBLite consensus disorder prediction 150 172 - -
Vian10g00742 320 MobiDBLite consensus disorder prediction 87 104 - -
Vian10g00742 320 NCBIfam LRP1 C-terminal domain 211 258 IPR006511 -
Vian10g00742 320 MobiDBLite consensus disorder prediction 185 206 - -
Vian10g00742 320 MobiDBLite consensus disorder prediction 84 104 - -
Vian10g00742 320 MobiDBLite consensus disorder prediction 150 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00742 Vian-Chr10 7245620 7247270 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00742 1 309 C2H2 Transcription Factor Family AT5G66350 50.746 1.26e-79 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Vian10g00742 DUF702 1.7e-64 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00742 - - gmx:100814589 478.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02358 4 40301520 40303024 Vian10g00742 10 7245620 7247270 ECH
Vian10g00742 10 7245620 7247270 Vian10g00742 10 7245620 7247270 ECH