Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00712 ATGTCGTTGAAAAGCATAGTAAGAGAACTGAAGGAGATGAGAGACGGGATTGGCAACATGTCAAAGCGAGGTGTGGAGAGCAGGCGTTGGAATGGTCGAACAAAGTCACATGTTGCTCCAGATATCACTCTAACTTCACTTGAACCGATTCAGCAAGGGCAGTGGGCGCATTTACCCCCTGAGTTGCTGCTGGACATAATAAGTAGGGTGGAAGAGAGCGAGACTACCTGGCCTGCACGTGCCGTTGTTGTTCATTGTGGTTCAGTTTGTAAATCTTGGAGGGATGTTACCAAAGAAATTGCCAAGACTCCTGAACAATGTGGAAGGATCACATTTCCTATTTCGTTGAAACAGCCCGGGCCACGGGATTCTCCAATACAGTGCTTTATCAGGAGGAACAGAGAAACTTCTACATATCTATTATACATTGGCCTGGTGCCATCGGAGAACGAGACTGATAAGTTGCTACTAGCTGCCAAAAAGGTAAGAAGGGCAACAGGGACAGACTTTATTGTGTCTTTGGTTGCAGATGACTTTTCTCGCTCCAGCAACACATATGTTGGAAAACTCAGGTCTAATTTTTTGGGTACCAAGTTCACTATTTATGACAGCCAACCACCACACGGAGCTGCAATTCAACAAGATAGTGGGTCTAGTAGGAGATTTCATTCTAAGCAGGCATCTCCTAGAGTTTCAGCATTTAACTATGTTGTTGGCACCATTGCCTATGAGTTGAATGTTCTCCGTGCAAGAGGGCCAAGGAGAATGCATTGTACCATGAACTCCATACCTGTCTCAGCTATTCAGGAAGGGGGCACTGCTCCAACACCTACGTCTTTCCCTCAAATCATTGACAAGCCTTTTTCTCCCTCACCAGCTCTAAAAGGAAAAGGTCCAAGTACAGATTTAAATAATGTAAACCTCCCTAAGCTAGCAGTACCTAGTCAAGGGTCATCTGAGCCCATGGTACTAAAAAATAAGGCTCCTAGATGGCACGAGCAACTGCAATGCTGGTGCCTAAACTTCAAGGGTCGTGTTACAGTGGCTTCTGTTAAAAACTTTCAACTTGTGGCCGCAGTTGATCCATCTCATAATGTTTTAGCTGCAGAACAAGAAAAAGTAATCTTGCAGTTTGGAAAGATTGGAAAAGACATATTTACTATGGATTACCGTTATCCGCTCTCTGCCTTCCAAGCCTTTGCCATATGTCTGAGCAGCTTTGACACCAAACCAGCTTGTGAATGA 1245 0.4466 MSLKSIVRELKEMRDGIGNMSKRGVESRRWNGRTKSHVAPDITLTSLEPIQQGQWAHLPPELLLDIISRVEESETTWPARAVVVHCGSVCKSWRDVTKEIAKTPEQCGRITFPISLKQPGPRDSPIQCFIRRNRETSTYLLYIGLVPSENETDKLLLAAKKVRRATGTDFIVSLVADDFSRSSNTYVGKLRSNFLGTKFTIYDSQPPHGAAIQQDSGSSRRFHSKQASPRVSAFNYVVGTIAYELNVLRARGPRRMHCTMNSIPVSAIQEGGTAPTPTSFPQIIDKPFSPSPALKGKGPSTDLNNVNLPKLAVPSQGSSEPMVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVDPSHNVLAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00712 414 ProSitePatterns Tub family signature 2. 399 414 IPR018066 -
Vian10g00712 414 ProSitePatterns Tub family signature 1. 342 355 IPR018066 -
Vian10g00712 414 Gene3D Tubby Protein; Chain A 113 414 IPR025659 -
Vian10g00712 414 PRINTS Tubby superfamily signature 392 414 IPR000007 -
Vian10g00712 414 PRINTS Tubby superfamily signature 371 390 IPR000007 -
Vian10g00712 414 PRINTS Tubby superfamily signature 342 358 IPR000007 -
Vian10g00712 414 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Vian10g00712 414 PRINTS Tubby superfamily signature 324 341 IPR000007 -
Vian10g00712 414 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Vian10g00712 414 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Vian10g00712 414 Pfam Tub family 116 409 IPR000007 -
Vian10g00712 414 CDD F-box_AtTLP-like 55 99 - -
Vian10g00712 414 SUPERFAMILY Tubby C-terminal domain-like 104 414 IPR025659 -
Vian10g00712 414 Gene3D - 48 104 - -
Vian10g00712 414 Pfam F-box domain 55 100 IPR001810 GO:0005515
Vian10g00712 414 SUPERFAMILY F-box domain 49 99 IPR036047 GO:0005515
Vian10g00712 414 PANTHER TUBBY-RELATED 49 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00712 Vian-Chr10 6911028 6912826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00712 1 414 TUB Transcription Factor Family AT2G18280 64.819 0.0 527
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vian10g00712 Tub 1.2e-106 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00712 K19600 - gmx:100778290 761.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00712 10 6911028 6912826 Vian10g00712 10 6911028 6912826 ECH
Vian1g01779 1 20894550 20896452 Vian10g00712 10 6911028 6912826 ECH
Vian10g00712 10 6911028 6912826 Vian1g01779 1 20894550 20896452 PCT