Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vian10g00712 | ATGTCGTTGAAAAGCATAGTAAGAGAACTGAAGGAGATGAGAGACGGGATTGGCAACATGTCAAAGCGAGGTGTGGAGAGCAGGCGTTGGAATGGTCGAACAAAGTCACATGTTGCTCCAGATATCACTCTAACTTCACTTGAACCGATTCAGCAAGGGCAGTGGGCGCATTTACCCCCTGAGTTGCTGCTGGACATAATAAGTAGGGTGGAAGAGAGCGAGACTACCTGGCCTGCACGTGCCGTTGTTGTTCATTGTGGTTCAGTTTGTAAATCTTGGAGGGATGTTACCAAAGAAATTGCCAAGACTCCTGAACAATGTGGAAGGATCACATTTCCTATTTCGTTGAAACAGCCCGGGCCACGGGATTCTCCAATACAGTGCTTTATCAGGAGGAACAGAGAAACTTCTACATATCTATTATACATTGGCCTGGTGCCATCGGAGAACGAGACTGATAAGTTGCTACTAGCTGCCAAAAAGGTAAGAAGGGCAACAGGGACAGACTTTATTGTGTCTTTGGTTGCAGATGACTTTTCTCGCTCCAGCAACACATATGTTGGAAAACTCAGGTCTAATTTTTTGGGTACCAAGTTCACTATTTATGACAGCCAACCACCACACGGAGCTGCAATTCAACAAGATAGTGGGTCTAGTAGGAGATTTCATTCTAAGCAGGCATCTCCTAGAGTTTCAGCATTTAACTATGTTGTTGGCACCATTGCCTATGAGTTGAATGTTCTCCGTGCAAGAGGGCCAAGGAGAATGCATTGTACCATGAACTCCATACCTGTCTCAGCTATTCAGGAAGGGGGCACTGCTCCAACACCTACGTCTTTCCCTCAAATCATTGACAAGCCTTTTTCTCCCTCACCAGCTCTAAAAGGAAAAGGTCCAAGTACAGATTTAAATAATGTAAACCTCCCTAAGCTAGCAGTACCTAGTCAAGGGTCATCTGAGCCCATGGTACTAAAAAATAAGGCTCCTAGATGGCACGAGCAACTGCAATGCTGGTGCCTAAACTTCAAGGGTCGTGTTACAGTGGCTTCTGTTAAAAACTTTCAACTTGTGGCCGCAGTTGATCCATCTCATAATGTTTTAGCTGCAGAACAAGAAAAAGTAATCTTGCAGTTTGGAAAGATTGGAAAAGACATATTTACTATGGATTACCGTTATCCGCTCTCTGCCTTCCAAGCCTTTGCCATATGTCTGAGCAGCTTTGACACCAAACCAGCTTGTGAATGA | 1245 | 0.4466 | MSLKSIVRELKEMRDGIGNMSKRGVESRRWNGRTKSHVAPDITLTSLEPIQQGQWAHLPPELLLDIISRVEESETTWPARAVVVHCGSVCKSWRDVTKEIAKTPEQCGRITFPISLKQPGPRDSPIQCFIRRNRETSTYLLYIGLVPSENETDKLLLAAKKVRRATGTDFIVSLVADDFSRSSNTYVGKLRSNFLGTKFTIYDSQPPHGAAIQQDSGSSRRFHSKQASPRVSAFNYVVGTIAYELNVLRARGPRRMHCTMNSIPVSAIQEGGTAPTPTSFPQIIDKPFSPSPALKGKGPSTDLNNVNLPKLAVPSQGSSEPMVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVDPSHNVLAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE | 414 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vian10g00712 | 414 | ProSitePatterns | Tub family signature 2. | 399 | 414 | IPR018066 | - | |
Vian10g00712 | 414 | ProSitePatterns | Tub family signature 1. | 342 | 355 | IPR018066 | - | |
Vian10g00712 | 414 | Gene3D | Tubby Protein; Chain A | 113 | 414 | IPR025659 | - | |
Vian10g00712 | 414 | PRINTS | Tubby superfamily signature | 392 | 414 | IPR000007 | - | |
Vian10g00712 | 414 | PRINTS | Tubby superfamily signature | 371 | 390 | IPR000007 | - | |
Vian10g00712 | 414 | PRINTS | Tubby superfamily signature | 342 | 358 | IPR000007 | - | |
Vian10g00712 | 414 | PRINTS | Tubby superfamily signature | 235 | 262 | IPR000007 | - | |
Vian10g00712 | 414 | PRINTS | Tubby superfamily signature | 324 | 341 | IPR000007 | - | |
Vian10g00712 | 414 | PRINTS | Tubby superfamily signature | 186 | 210 | IPR000007 | - | |
Vian10g00712 | 414 | PRINTS | Tubby superfamily signature | 170 | 186 | IPR000007 | - | |
Vian10g00712 | 414 | Pfam | Tub family | 116 | 409 | IPR000007 | - | |
Vian10g00712 | 414 | CDD | F-box_AtTLP-like | 55 | 99 | - | - | |
Vian10g00712 | 414 | SUPERFAMILY | Tubby C-terminal domain-like | 104 | 414 | IPR025659 | - | |
Vian10g00712 | 414 | Gene3D | - | 48 | 104 | - | - | |
Vian10g00712 | 414 | Pfam | F-box domain | 55 | 100 | IPR001810 | GO:0005515 | |
Vian10g00712 | 414 | SUPERFAMILY | F-box domain | 49 | 99 | IPR036047 | GO:0005515 | |
Vian10g00712 | 414 | PANTHER | TUBBY-RELATED | 49 | 412 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vian10g00712 | Vian-Chr10 | 6911028 | 6912826 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vian10g00712 | 1 | 414 | TUB Transcription Factor Family | AT2G18280 | 64.819 | 0.0 | 527 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | TUB | Vian10g00712 | Tub | 1.2e-106 | CL0395 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vian10g00712 | K19600 | - | gmx:100778290 | 761.525 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vian10g00712 | 10 | 6911028 | 6912826 | Vian10g00712 | 10 | 6911028 | 6912826 | ECH | |
Vian1g01779 | 1 | 20894550 | 20896452 | Vian10g00712 | 10 | 6911028 | 6912826 | ECH | |
Vian10g00712 | 10 | 6911028 | 6912826 | Vian1g01779 | 1 | 20894550 | 20896452 | PCT |