Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00711 ATGAGAATGGACATTGGTGAAGGGGAGGCCTTGCTAAATCCCCGCTCCTTTAAGGTGCATGGTAAAATGTGCACAGAACTTGCAAAATTAGTTCATAGAATCTCAAGAATAGTTCCAGACATAGAGGCGGCTCGGCCAGGGTTCTCATCAGGAATAGAGTCTCTGTGTTTGCTGAACAACACAATTGAAAAAGCCAAAGTGCTCGTGCAGCATTGCTCTGAATGCAGCAAACTCTACCTGGTTATGACAGGGGATACAGTACTCTCAAGATGCCTAAAGACAACACGATTATTAGAGAAAAGCTTAATCCAAATTCAGAACATGGTTCCTGTTATGTTGGCAGTGAAGGTTTCTAGAATAATTCATGATCTTGAGTGTACGAGATTTGTTCTGGACCCCAATGAAGAAGAGGCTGGGAGGGTTGTGAAAGAGTTGCTCACTTCAACTTCAGATTCAGTCGACGATTCTGAATTTAAAGCTCTTCAGTCTGTGGCATCGCGACTGAAAATAACATCAGCGAGGGCCATCGTAACAGAGCAACGATCTATTAGGAAGTTGTTGGATAAACTTGGACCAAATGAGCTGACAAAGAAAAAGATACTGAGTTATCTTCTGCTTCTACTGAAAAAGCATGCAAAGCTCCTGGTGGAAGAACATGAGGAGAGGGTCTATTCTTCCGAAGAACATGTTGCAACGGAGAACTCTTATCACGATTCTCTACGAAACCATCATGTGGAGTCAGACCAAAGCTTAAACTATGATCAGTATATAACTCACACCGGTGAGTTAGGTGGAGTTGACCTCCCTGAGCAATATAAATGCCCAATATCCTCAAGGTTGATGAATGATCCTGTTATCATTGAATCAGGAGTAACATATGAAAGGAGGTGGATAAAAAAGTGGTTTGATGAGGGTAAGGATATATGCCCCAAAACCAGAAAGAAACTAATCCATACGGCTTTAACTCCAAATGTGGCCATGAAGGACTTAATATCAAAGTGGTGCAGAAAAAATGGAGTCTCCATTCCAGATCCTAGTAGGCAAGCAGAAGATATTTCCTCATGGGATGCTTCAAGCACTTCCATTAATAGTATAGGAAGTTATTTCAATGATTTCAACCCGCCAGGGGATCTTAGTAACATGTCAATTGGGTCACTTGATGCTAGTTTTAGTTCAGATGCCTCGCATGGTAGGACCACTCGTGGCTCTATGCTGATCAGGACTAGTGACAATTCTGAAAGACATCAAGTTCATACAGAGATACATGATACTGATTTGATGCTCTTGCCTCAACTCGGTGATCTTCAATGGGATTCTCAATGCAAGGTCATTCAAGACCTGAAAGATCACTTGAAAAGCAATAGCCAAGCTTTTGGTTCTGTATCTGCAGACAGTTTGGTTGAACCACTCCTCAGATTTCTGAACAATGCATATGATCTGCGTGATGTTCAAGCGTTGAGAGCTGGAACTCAACTTCTGTTGGATTTTGTGAACAACTGCAGAAATGGTAATACTAATTTGAATGAAGAGACGTTCATTATGTTGGCAAGTTTTCTTGATTCAGAAGCGACAGAAGAAATTCTTGCCATACTGGAAGAACTGTCAGGACGTTGGTATAATGCACCTAAAATTGCAGCATCCAGTGCTCTCAATTCTATTTTAAACATACTTGATTTCGGAAAAAAAGGTTTCCAACAACAAGCTATTAGAATAATGTACAATTTGTCTTTCATTGGCGAAGTCTGTCCCCGCATGCTATCACTCAAGTGCATCCCAAAATTGCTGCCATTTTTCGAAGACAGAAACCTTTTGAGGTATTGCATACGTATACTGAAAAATCTTTGTGATACTGAAGAGGGTAGGAATTCTGTTGCTGAAACAAAGGGGTGCGTAACTTCGGTTACTGAAATACTTAATACCGGCAATAATGAAGAACAAGAACATGCACTGGCAGTTCTAGTCTCTCTATGCTCTCATGTGGATTACTTGAAGTTAGTAATGAGTGAGCATGACAATATCATACCTTCTCTTTTCTTGATCTCCCAGAATGGAAACGATAAAGGAAAGAAAAGTGCGTTGGAATTGATCCATCTTTTGGATGATGTCAACATTGGTGACAATAAAGATTGCCCTGAGCCAAATATCAGCAACTCTTGTCGAGATTCTAACACTCACCCAGCTGAAGAAAATAGACCACCGAAGAAATCCACGTTTCTGAAGAAGCTATCACCATTCTCAAAGTCCAGTTCACATGGATCAAAATCCAAAAGATGA 2274 0.4077 MRMDIGEGEALLNPRSFKVHGKMCTELAKLVHRISRIVPDIEAARPGFSSGIESLCLLNNTIEKAKVLVQHCSECSKLYLVMTGDTVLSRCLKTTRLLEKSLIQIQNMVPVMLAVKVSRIIHDLECTRFVLDPNEEEAGRVVKELLTSTSDSVDDSEFKALQSVASRLKITSARAIVTEQRSIRKLLDKLGPNELTKKKILSYLLLLLKKHAKLLVEEHEERVYSSEEHVATENSYHDSLRNHHVESDQSLNYDQYITHTGELGGVDLPEQYKCPISSRLMNDPVIIESGVTYERRWIKKWFDEGKDICPKTRKKLIHTALTPNVAMKDLISKWCRKNGVSIPDPSRQAEDISSWDASSTSINSIGSYFNDFNPPGDLSNMSIGSLDASFSSDASHGRTTRGSMLIRTSDNSERHQVHTEIHDTDLMLLPQLGDLQWDSQCKVIQDLKDHLKSNSQAFGSVSADSLVEPLLRFLNNAYDLRDVQALRAGTQLLLDFVNNCRNGNTNLNEETFIMLASFLDSEATEEILAILEELSGRWYNAPKIAASSALNSILNILDFGKKGFQQQAIRIMYNLSFIGEVCPRMLSLKCIPKLLPFFEDRNLLRYCIRILKNLCDTEEGRNSVAETKGCVTSVTEILNTGNNEEQEHALAVLVSLCSHVDYLKLVMSEHDNIIPSLFLISQNGNDKGKKSALELIHLLDDVNIGDNKDCPEPNISNSCRDSNTHPAEENRPPKKSTFLKKLSPFSKSSSHGSKSKR 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00711 757 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 266 342 IPR013083 -
Vian10g00711 757 Gene3D - 428 707 IPR011989 -
Vian10g00711 757 Pfam U-box domain 269 338 IPR003613 GO:0004842|GO:0016567
Vian10g00711 757 ProSiteProfiles U-box domain profile. 267 341 IPR003613 GO:0004842|GO:0016567
Vian10g00711 757 Pfam Kinesin-associated protein (KAP) 482 657 - -
Vian10g00711 757 SUPERFAMILY ARM repeat 428 699 IPR016024 -
Vian10g00711 757 PANTHER U BOX DOMAIN-CONTAINING 22 707 - -
Vian10g00711 757 MobiDBLite consensus disorder prediction 713 757 - -
Vian10g00711 757 SMART Ubox_2 271 334 IPR003613 GO:0004842|GO:0016567
Vian10g00711 757 SUPERFAMILY RING/U-box 262 345 - -
Vian10g00711 757 CDD RING-Ubox_PUB 269 321 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00711 Vian-Chr10 6905390 6908920 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00711 1 703 U-box Gene Family AT4G36550 38.042 1.07e-138 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00711 - - gmx:100775550 1102.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00711 10 6905390 6908920 Vian10g00711 10 6905390 6908920 ECH
Vian1g01777 1 20872471 20876173 Vian10g00711 10 6905390 6908920 ECH
Vian10g00711 10 6905390 6908920 Vian1g01777 1 20872471 20876173 PCT