Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00710 ATGGCATCATCTTGGACTCCAAGGCAAAACAAACTATTTGAAGAAGCTCTTGCTATATACGATAGGGACACTCCTGACAAGTGGCAGAATGTGGCAAGAGTAGTTGGAAAATCTGTTGAAGAAGTTAAAAACCACTTTGAGATCCTCAAAGAAGATGTCAACCGCATTGAACGTGGACAAGTTCCATTACCTAATTACAGAGTAACATCCGCTGCGGTGGTTTCCATGTCCACGTTCTCCGATCGTGCCTACGCTGACTCTTCCTTCCGATTCCCTTTCTTCTCTTCTTCACCTTCCAATGCGCCATCGCCGCCGAACCAGTCTTCCGACACCAACTCGGAGCCTCCGGCGCCTGAGGAACCTAACAAGTCGGGGTTCGACCCGGAATCGTTAGAAAGAGGAGCTAAAGCTCTCCGTCAAATCAACAGTTCGTCCTACTCAAAGCAGGTGTTTGATTTAATGCGAAAGCAGGAGCAAACTCGCCTCGCTGAATTAGACGCTGAGAGAGTTCACTACGAACTTATTCAATCTCAAGGAGATATTGAAAGACAGCGGAAAATGGCTGAAGAACAACGTAATTTAATACAAGAGCAAGCCCAGAGACAGGCCCAGGTGCTGCGATACGAGGATGAATTAGCAAGGAAAAGAATGCAGACAGATCATGAAGCCCAGAGGCTACATAATGTTGAATTGGTCAAGATGCAAGAGGAGTCTTCTGTAAGAAAGGAGCGGGCAAGACAGGCTACTGAGGAACAGATTCAATCTCAGCAGCGTCAGACTGAGAGAGAGAGAGCTGAAATAGAAAGAGAAACTATTAGAGTTAAGGCAATGGCTGAGGCTGAAGGCCGAGTTCATGAAGCTAAGTTGACCGAGGAGCATAATAGGAGAATGCTGATAGAACGACTGCAAGGTGAAAGGGATAAATGGCTTGCTGCAATTAACACAACTTTCAGTCATATTGAAGGTGGTCTAAGGGCCTTGTTGACTGATAGGGACAAATTGCTTATGACTGTTGGAGGAGCTACTGCACTAGCTGCAGGAGTATATACAACTAGAGAAGGTGCTAAAGTCACCTGGGGCTATATTAATCGAATTCTAGGGCAGCCATCATTGATCCGGGAATCGTCAATGGCAAAATTCCCTGGATCAAAGATAATTTCTCAAGCCAAAAGTAAACTTCTACATGGTAGTACTTTGGCTGGGGCAGAAAAACCTTTTGGGAATAAAAATGGTCTTGGAAATGTGATCCTCCATCCATCGTTGCAGAGAAGAATAGAGCATCTTGCACGTGCAACATCAAATACCAAAGCCCATCAGGCACCATTTCGTAATATGCTTTTTTATGGGCCTCCAGGCACTGGTAAAACTATGGTTGCAAGGGAAATAGCGAGAAGATCGGGTTTAGATTATGCCATGATGACCGGAGGAGATGTTGCACCTCTTGGCGCCCAGGCTGTTACCAAAATTCATGATATATTTGATTGGGCCAAGAAATCTAGGAAAGGCCTATTGCTTTTTATTGATGAGGCAGATGCTTTCCTTTGCGAGCGTAACAGCACACTCATGAGTGAAGCTCAGCGAAGTGCTTTAAACGCATTGCTCTTCAGAACTGGTGATCAGTCTCGAGACATAGTACTTGTTCTTGCGACAAACAGACCAGGTGATCTTGATAGTGCAGTTACTGATCGGATTGATGAAGTGATTGAATTTCCGCTTCCAGGAGAGGAAGAGCGTCTGAAGTTATTGAAGCTGTATTTAAACAAATATTTATGTGATGACAATAATGGTTCTAAGGGAGGCTTCTTGCTAAAGAAGCAGCCTCAGAAGATTACTATAAAAGATTTATCAGAGGATGACTTCAGAGAAGCTGCGAAGAAAACGGAGGGATTTTCAGGCCGTGAGATCGCCAAACTCATGGCTAGTGTCCAAGCTGCTGTCTATGGGCGCCCAGACTGCATCTTGGATTCCCAGTTGTTTAAAGAGATTGTAGATTACAAAGTGGTGGAACATCACCAGCGACTAAAACTAGCAGCTGAAGGTGGCTACCCCGGCCAAATATAG 2061 0.4488 MASSWTPRQNKLFEEALAIYDRDTPDKWQNVARVVGKSVEEVKNHFEILKEDVNRIERGQVPLPNYRVTSAAVVSMSTFSDRAYADSSFRFPFFSSSPSNAPSPPNQSSDTNSEPPAPEEPNKSGFDPESLERGAKALRQINSSSYSKQVFDLMRKQEQTRLAELDAERVHYELIQSQGDIERQRKMAEEQRNLIQEQAQRQAQVLRYEDELARKRMQTDHEAQRLHNVELVKMQEESSVRKERARQATEEQIQSQQRQTERERAEIERETIRVKAMAEAEGRVHEAKLTEEHNRRMLIERLQGERDKWLAAINTTFSHIEGGLRALLTDRDKLLMTVGGATALAAGVYTTREGAKVTWGYINRILGQPSLIRESSMAKFPGSKIISQAKSKLLHGSTLAGAEKPFGNKNGLGNVILHPSLQRRIEHLARATSNTKAHQAPFRNMLFYGPPGTGKTMVAREIARRSGLDYAMMTGGDVAPLGAQAVTKIHDIFDWAKKSRKGLLLFIDEADAFLCERNSTLMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAVTDRIDEVIEFPLPGEEERLKLLKLYLNKYLCDDNNGSKGGFLLKKQPQKITIKDLSEDDFREAAKKTEGFSGREIAKLMASVQAAVYGRPDCILDSQLFKEIVDYKVVEHHQRLKLAAEGGYPGQI 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00710 686 MobiDBLite consensus disorder prediction 96 129 - -
Vian10g00710 686 ProSitePatterns AAA-protein family signature. 544 563 IPR003960 GO:0005524|GO:0016887
Vian10g00710 686 SMART AAA_5 441 574 IPR003593 GO:0016887
Vian10g00710 686 PANTHER PUTATIVE ATP-ASE 80 679 - -
Vian10g00710 686 SUPERFAMILY Homeodomain-like 3 57 IPR009057 -
Vian10g00710 686 MobiDBLite consensus disorder prediction 234 249 - -
Vian10g00710 686 Pfam ATPase family associated with various cellular activities (AAA) 445 572 IPR003959 GO:0005524|GO:0016887
Vian10g00710 686 CDD SANT 4 50 IPR001005 -
Vian10g00710 686 Gene3D - 404 572 IPR027417 -
Vian10g00710 686 MobiDBLite consensus disorder prediction 234 266 - -
Vian10g00710 686 FunFam Transcription factor SRM1 1 63 - -
Vian10g00710 686 Pfam ATPase family AAA domain-containing protein 3, N-terminal 111 373 IPR021911 -
Vian10g00710 686 Gene3D - 2 63 - -
Vian10g00710 686 Coils Coil 239 273 - -
Vian10g00710 686 MobiDBLite consensus disorder prediction 96 118 - -
Vian10g00710 686 SMART sant 1 52 IPR001005 -
Vian10g00710 686 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 428 668 IPR027417 -
Vian10g00710 686 FunFam ATPase family AAA domain-containing protein 3 399 589 - -
Vian10g00710 686 Coils Coil 181 201 - -
Vian10g00710 686 ProSiteProfiles SANT domain profile. 1 54 IPR017884 -
Vian10g00710 686 Gene3D - 573 675 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00710 Vian-Chr10 6869797 6878412 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00710 421 648 Miscellaneous Gene Families AT5G53170 29.289 9.50e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00710 K17681 - gmx:100777755 1039.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01774 1 20842416 20843476 Vian10g00710 10 6869797 6878412 ECH
Vian10g00710 10 6869797 6878412 Vian10g00710 10 6869797 6878412 ECH
Vian5g01497 5 37531088 37531369 Vian10g00710 10 6869797 6878412 ECH
Vian10g00710 10 6869797 6878412 Vian1g01774 1 20842416 20843476 ECH