Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00708 ATGGAAATGGGAGGCCAAGATAAGGAAATAGAGATACCAACAAGTTTAGGTTACAACCTTCCCAACAGAGATTCTTCTTCTTCCTCTTCCAAGCTCTCTTCTCCAACACTTGGTGAAAGAAGTACCACTCATCATGATCGTGATCAACCTCATCATCAACCACCTCATCAAACTCACACATTAATCTTCAACGACCCACCTCACCATAATCTCTACCCACCACCACCTCCTCCTCCTCTTGCACCTCGTCAACCTCATACACTCACACCAGATCCAGATCTAACCACCCCAATTGCTCCCACATCGAATCCTCTAAGAACACCACACCCCCACATAACAACAATACCACAACCAGCAGCAGCAGCAACAACCTCAACCTCAACCTCAACCCCGTCGATCAGGTACCGAGAATGTCTTCGGAACCACGCGGCAAGCATGGGGAGCCACGTGGTGGATGGCTGTGGAGAGTTCATGGCAAGTGGCGAAGAAGGTACGCTGGAATCACTAAGATGCGCCGCGTGTGAGTGTCACCGCAACTTCCACAGGAAAGAGGTTGACGGAGAGTTACAGCCACAACAACCACCGCCACTGTCACTGGTACAGCAACAGCAACAACAACAACATGTTCCCAATTATCACAGCTACTACCCCAACAAGCACAATGGGCATCTTCACTACCCTACACCCTCTCCTTCTTCCCTCCATCATCACAGATTAGTTGGTAGCAGTGGTACACCGAGTCTGGTTCCCCCAGTGATGATGGCCTTTGGAGGCCCAGCTGAGTCCTCAAGCGAAGATCTGAACATGTTTCAGTCCAACACCGGAGGAGCACAGTTATCAGTGCAGGCGCCACTTTCTTCCAAGAAGAGGTTTAGGACTAAATTCTCTCAGCACCAGAAGGATAGGATGATGGAGTTTGCTGAAAAGATTGGTTGGAAGATTCAGAAACATAATGAGCAGGAGGTACAGCAATTTTGTTCTCAAGCGGGCGTAAAGAGACAAGTTTTCAAGGTTTGGATGCACAATAACAAGAAGCACCCAATGTAA 1047 0.4862 MEMGGQDKEIEIPTSLGYNLPNRDSSSSSSKLSSPTLGERSTTHHDRDQPHHQPPHQTHTLIFNDPPHHNLYPPPPPPPLAPRQPHTLTPDPDLTTPIAPTSNPLRTPHPHITTIPQPAAAATTSTSTSTPSIRYRECLRNHAASMGSHVVDGCGEFMASGEEGTLESLRCAACECHRNFHRKEVDGELQPQQPPPLSLVQQQQQQQHVPNYHSYYPNKHNGHLHYPTPSPSSLHHHRLVGSSGTPSLVPPVMMAFGGPAESSSEDLNMFQSNTGGAQLSVQAPLSSKKRFRTKFSQHQKDRMMEFAEKIGWKIQKHNEQEVQQFCSQAGVKRQVFKVWMHNNKKHPM 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00708 348 MobiDBLite consensus disorder prediction 89 110 - -
Vian10g00708 348 MobiDBLite consensus disorder prediction 68 86 - -
Vian10g00708 348 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 117 345 - -
Vian10g00708 348 NCBIfam homeobox domain, ZF-HD class 288 345 IPR006455 -
Vian10g00708 348 Gene3D - 276 347 - -
Vian10g00708 348 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 135 184 IPR006456 -
Vian10g00708 348 MobiDBLite consensus disorder prediction 117 131 - -
Vian10g00708 348 MobiDBLite consensus disorder prediction 18 39 - -
Vian10g00708 348 Pfam ZF-HD protein dimerisation region 133 185 IPR006456 -
Vian10g00708 348 SUPERFAMILY Homeodomain-like 277 344 IPR009057 -
Vian10g00708 348 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 134 185 IPR006456 -
Vian10g00708 348 FunFam Zinc-finger homeodomain protein 2 276 348 - -
Vian10g00708 348 MobiDBLite consensus disorder prediction 40 54 - -
Vian10g00708 348 MobiDBLite consensus disorder prediction 1 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00708 Vian-Chr10 6860658 6861704 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00708 68 345 ZF-HD Transcription Factor Family AT2G18350 43.110 9.57e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vian10g00708 ZF-HD_dimer 5.1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00708 - - vra:106776405 536.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00708 10 6860658 6861704 Vian10g00708 10 6860658 6861704 ECH
Vian1g01772 1 20830456 20831418 Vian10g00708 10 6860658 6861704 ECH
Vian10g00708 10 6860658 6861704 Vian1g01772 1 20830456 20831418 PCT