Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00706 ATGGGACCCTGTACATGTGGCATCTCCCACGGCCAAACCACCTCCTTCTCAATGCCCTTCTCCGGGCCAAACCACAAACCACCCTACCAAGATTCCGACATTTACGATTATTCCTTCACCTCCTCCTCTTCTTCTTCTTCCCCTTCCGTTGACTGCACCCTTTCCCTCGGTACCCCATCCACCCGTTTCTCCCAAGACGACCAAAAACCTACTCGCCACGAACGTAGATCCGTTTCTAACTTCTGTTGGGACTTACTACAATCCAAACACAACCCTCAATCCCAAACCAAGTCCTCCAGAACCTCCAATACCACCTCAAACCCCGACCCTCTCATCGCTCGCCGCTGCGCCAATTGTGATACCACCTCAACTCCCCTTTGGAGAAATGGCCCCCGAGGCCCCAAGTCGCTGTGCAATGCGTGTGGGATTAGATTCAAGAAGGAGGAAAGAAGGGCGAGTGCCGCGGCCGCACCGCCGCAGCGGGCTTCTGGCGGCATGATGGAATCGGCGCAGGTGTACAACAATTCGTGGTACGCACACCCGCAGAGTCAGAAGATGCAGTGTTTCTCACCGGGGATGGGGAGCGAGTTCCGTTTCGCGGATGACGGCGATCGAGACGCCGATAACGGCATTCCGTTTCTCTCGTGGAGACTCAACGTCGCAGACAGAACGAGCCTCGTCCACGACTTCACAAGATGA 699 0.5565 MGPCTCGISHGQTTSFSMPFSGPNHKPPYQDSDIYDYSFTSSSSSSSPSVDCTLSLGTPSTRFSQDDQKPTRHERRSVSNFCWDLLQSKHNPQSQTKSSRTSNTTSNPDPLIARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASAAAAPPQRASGGMMESAQVYNNSWYAHPQSQKMQCFSPGMGSEFRFADDGDRDADNGIPFLSWRLNVADRTSLVHDFTR 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00706 232 ProSitePatterns GATA-type zinc finger domain. 116 141 IPR000679 GO:0006355|GO:0043565
Vian10g00706 232 Gene3D - 112 172 IPR013088 GO:0006355|GO:0008270
Vian10g00706 232 SMART GATA_3 110 162 IPR000679 GO:0006355|GO:0043565
Vian10g00706 232 Pfam GATA zinc finger 116 150 IPR000679 GO:0006355|GO:0043565
Vian10g00706 232 MobiDBLite consensus disorder prediction 34 65 - -
Vian10g00706 232 MobiDBLite consensus disorder prediction 89 112 - -
Vian10g00706 232 PANTHER GATA TRANSCRIPTION FACTOR 18 2 232 IPR044272 GO:0003700|GO:0009908
Vian10g00706 232 MobiDBLite consensus disorder prediction 15 74 - -
Vian10g00706 232 CDD ZnF_GATA 115 147 IPR000679 GO:0006355|GO:0043565
Vian10g00706 232 ProSiteProfiles GATA-type zinc finger domain profile. 110 146 IPR000679 GO:0006355|GO:0043565
Vian10g00706 232 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 112 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00706 Vian-Chr10 6832120 6833020 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00706 15 232 C2C2-Gata Transcription Factor Family AT3G50870 45.318 1.73e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vian10g00706 GATA 5.4e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00706 - - gmx:100790571 337.035
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00706 10 6832120 6833020 Vian10g00706 10 6832120 6833020 ECH
Vian10g00706 10 6832120 6833020 Vian1g01767 1 20757848 20759007 PCT