Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00693 ATGGCGGAGGAGGAAGCGAAGTTACTTAATGCTAGGATAAAGGAAGAGGAGGTTCAGTGCGAGGAGGCACCTGACCTCAACGACACACAGTTTAACAAATTGGATGAGCTTTTGACTCAGACCAAGCTGTACTCCGAATTTTTGCTGGAGAAAATGGATGACATCACACTTAATGTGGGTGAACAAGTGAAAATGGAAGAGCAAGAGAGCAATCCTTCTGCAAAGAGGGGTAGGGGATCGAAAAGAAAAGCTGCTTCCCAGTGCAATACTAGGAGGGCCAAAAGGGCAGTTGCTGCCATGCTGACAAGATCTAAAGAAGGTGAGGGGACTGTAGATATGAAAATGACTGAGGAAGAAAGAGTTGAGAAGGAGCAGAAAGAGCTCATGCCTTTACTGACAGGGGGAAAATTGAAGCCTTATCAACTAAAGGGTGTAAAGTGGTTGATTTCCTTGTGGCAAAATGGATTGAATGGAATTCTTGCTGATCAAATGGGTCTTGGAAAGACAATCCAAACTATTGGATTTCTCTCACATCTAAAAGCGAAAGGTCTGGATGGGCCATACATGATAATTGCTCCTCTATCAACCCTTTCAAACTGGGTGAACGAGATTTCTAGGTTTGCACCATCACTTCCTACAATTATCTACCATGGTGACAAGAAGGAGAGAAATGAGATCCGAAGGAAATACATGCCTAGAACAATTGGCCCAAAATTTCCCATAGTCTTAACTTCTTACGAGGTTGCATTAAATGATGCCAAGAAATATTTTAGGCCATACAGTTGGAAATATCTCGTTATTGATGAGGGACACAGGCTCAAAAATTCACAATGCAAATTAGTAAAGGCATTGAAATACTTAACTGTTGAAAACAAGCTTCTTCTAACTGGAACTCCACTTCAGAACAACTTGGCCGAACTATGGTCTCTATTGAACTTCATTTTGCCTGATATTTTTGCATCCCTTGAAGAGTTCGAGTCATGGTTTAATTTGTCAGCGAAGGGCAATAATGAAGCAACCAAGGAAGAACTAGAAGAGAAACGAAGATCCCAAGTAGTAGCAAAGCTCCATGCTATTCTTCGACCCTTTCTTCTGCGTAGGATGAAGTCTGATGTGGAGATTATGTTGCCAAAGAAAAAAGAGATTATTATCTATGCAAACATGACCGACTATCAGAAGAAGTTGCGGGATCATTTAGTTAATAAGACGTTGGGAAACTATTTAAAAGAAAAAATGTCAAGCGGACGCCCTTTTCCTGCAAGTGCGCTTCGTAATTTGGCTATTCAGCTTAGGAAAGTGTGTAACCATCCCGATCTTATAGATCCAGACTGTGATCATACATATTTATATCCTCCTGTAAATGAAATAGTTGAACAGTGTGGAAAATTCCATTTGCTTGATCGATTGGTGCAACGTTTATTTGCAAGGAATCACAAAGTTCTTGTCTTCAGTCAGTGGACTAAAGTGTTAGATATAATAGATTATTATTTTAGTGAAAAAGGCTTTGAAGTTTGCAGGATTGATGGTTCTGTGAAACTGGATGATAGGAAACGACAGATCCAGGACTTCAACGATGAAAATAGCAATTGCAGAGTTTTTCTTCTTTCTACTAGGGCTGGTGGATTGGGAATCAACCTTACTGCAGCTGATACTTGCATTCTTTATGACAGTGACTGGAATCCTCAGGTGGATTTGCAGGCCATGGATAGGTGTCATAGAATTGGTCAAACAAAGCCTGTTCATATCTACCGGCTGTCAACTGCTCAATCCATAGAGGATCGCATGTTGAAAAGGGCTTTCAGCAAATTGAAGCTTGAGCATGTGGTGATTGGGAAAGGACAGTTTCATCAAGAGCGTAAAGCTGTCAATACTGATCAGATAGAGGAAGAGGATGTTTTGGCATTGCTTCGTGACGATGAAACAGATGAAGATAAAATGATACGAACAGATATTAGTGATGAAGACCTGGAGAAGCTCATGGATCGCAGTGATCTTATCGTCAACAACTCAGACGAACCTCCATGCAGTTCCTTTCCTCTTAAAGGTCCAGGGTGGGAGGTGGTGATTCCAACTGCGACTGGAGGTGTACTCTCTACTCTCAACAGCTAG 2109 0.413 MAEEEAKLLNARIKEEEVQCEEAPDLNDTQFNKLDELLTQTKLYSEFLLEKMDDITLNVGEQVKMEEQESNPSAKRGRGSKRKAASQCNTRRAKRAVAAMLTRSKEGEGTVDMKMTEEERVEKEQKELMPLLTGGKLKPYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLSHLKAKGLDGPYMIIAPLSTLSNWVNEISRFAPSLPTIIYHGDKKERNEIRRKYMPRTIGPKFPIVLTSYEVALNDAKKYFRPYSWKYLVIDEGHRLKNSQCKLVKALKYLTVENKLLLTGTPLQNNLAELWSLLNFILPDIFASLEEFESWFNLSAKGNNEATKEELEEKRRSQVVAKLHAILRPFLLRRMKSDVEIMLPKKKEIIIYANMTDYQKKLRDHLVNKTLGNYLKEKMSSGRPFPASALRNLAIQLRKVCNHPDLIDPDCDHTYLYPPVNEIVEQCGKFHLLDRLVQRLFARNHKVLVFSQWTKVLDIIDYYFSEKGFEVCRIDGSVKLDDRKRQIQDFNDENSNCRVFLLSTRAGGLGINLTAADTCILYDSDWNPQVDLQAMDRCHRIGQTKPVHIYRLSTAQSIEDRMLKRAFSKLKLEHVVIGKGQFHQERKAVNTDQIEEEDVLALLRDDETDEDKMIRTDISDEDLEKLMDRSDLIVNNSDEPPCSSFPLKGPGWEVVIPTATGGVLSTLNS 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00693 702 FunFam Chromatin complex subunit A 106 377 606 - -
Vian10g00693 702 Coils Coil 1 21 - -
Vian10g00693 702 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 149 317 IPR014001 -
Vian10g00693 702 Gene3D - 105 366 IPR038718 -
Vian10g00693 702 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 465 633 IPR001650 -
Vian10g00693 702 Pfam Helicase conserved C-terminal domain 468 575 IPR001650 -
Vian10g00693 702 MobiDBLite consensus disorder prediction 63 89 - -
Vian10g00693 702 CDD SF2_C_SNF 451 585 - -
Vian10g00693 702 Gene3D - 373 672 IPR027417 -
Vian10g00693 702 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 118 367 IPR027417 -
Vian10g00693 702 PANTHER SNF2/RAD54 HELICASE FAMILY 11 644 - -
Vian10g00693 702 SMART helicmild6 491 575 IPR001650 -
Vian10g00693 702 FunFam ATP-dependent DNA helicase DDM1 131 376 - -
Vian10g00693 702 SMART ultradead3 133 328 IPR014001 -
Vian10g00693 702 Pfam SNF2-related domain 140 440 IPR000330 GO:0005524|GO:0140658
Vian10g00693 702 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 369 660 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00693 Vian-Chr10 6681308 6686354 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00693 123 624 RAD5 or RAD16-like Gene Family AT3G16600 24.138 1.84e-32 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vian10g00693 SNF2_N 4.6e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00693 K19001 - gmx:100777687 1214.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00693 10 6681308 6686354 Vian10g00693 10 6681308 6686354 ECH