Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00691 ATGGGGGACTTCAACAGCAACAACAACAACGATGCCTTCATGCGCAACCAAAACGCCGCCGTTCAGGCTCGCACCAAAGCCCAGAACCGTTCCAACGTCCTTCAGCTCAAACTGATTCAGATTGGACAGAGTCATCCGACTGGTCTCACAGCGAACCTGCTGAAGCTCTTCGAGCCTAGGCCTCCTTTGGAGTACAAACCGCCGCCCGAGAAACGGAAATGTCCACCGTTGACAGGGATGGCACAATTTGTGAGCAAATTTGCTGAGCCTGGGGATCCAGAATACGCTCCACCTGTTCCAGAAACCGAAACTCCTGCACAAAAAAGAGCCAGAATACACAAGCTAAGACTAGAAAAGGGAGCTGCAAAGGCTGCTGAAGAGCTTGAGAAATATGATCCTCATAATGATCCAAATGTGTCTGGAGATCCATACAAGACATTGTTTGTGGCTAAACTTAGTTACGAGACCACTGAAAGCAGAATCAAAAGGGAGTTTGAGTCATATGGTCCAATCAAACGGGTTCGATTAGTTGCTGACAAAGAGACTAATAAGCCCAAGGGTTATGCTTTCATTGAGTTTCTGCATACAAGAGACATGAAAGCTGCTTACAAACAAGCTGATGGTAGGAAAATCGATGGTAGAAGGGTGCTCGTTGATGTTGAGCGTGGGAGGACTGTTCCAAATTGGAGACCTCGCCGCCTGGGTGGTGGGCTTGGTACTACTAGAGTTGGGGGTGAAGAAGTTAATCAACGGCATTCTGGGAGGGAAGCTGACATGATTTCAATTTTCAGGGAGCAACAACAGTCTCGTTCTGAAGAACCAAGAGCGCGAGAGGACCGGCATGGTGATAGGGACAGGGAAGTATCACGTGAAAAAGGTAGGGATAGAGATCGGGAGCGATCTCGGGAGCATTCTCATGAAAGGGTCAGGGATCGTGATTATAGAGAGGATAGACACCACAGAGACAGAGATAGGACAAGAGACAGGGATAGGGAAAGAGACAGAGATCGTGGACGTGATCGAGATAGGGCACGGGATCGTGATAGGGATAGGGACCGTGATCGACACCGTGAAAGGGATAGAGACTATGATGTCGGGGACACTGATCGACGTTCACGTGATAGGGAGTCTGAATATGATCGTGTGGAATCTAAACATGAGAGGGACCAACATGGAGAAAGGAACCGTGAGTATGAGCCTGAGGATGATCGTGGTAGGCATAGCCAGTACGAGCATGGACGTCGACATGCAGACCCTGATCATGACCCTGAGCAGTATGACCACTACCATGGAGATGACCGTGGTGATCATTACAATCAGTATCATGACCATGATAGGATGGAAGATGACTACCATGTAGGGCGTGCAACATCTGAATCACATGAAAAGGAGAAAAGTCATGGTACAGACCGTGAATATCGTCGCACAGAGAGATCTCATTCCCGGGAGTATGATTACTAG 1461 0.4853 MGDFNSNNNNDAFMRNQNAAVQARTKAQNRSNVLQLKLIQIGQSHPTGLTANLLKLFEPRPPLEYKPPPEKRKCPPLTGMAQFVSKFAEPGDPEYAPPVPETETPAQKRARIHKLRLEKGAAKAAEELEKYDPHNDPNVSGDPYKTLFVAKLSYETTESRIKREFESYGPIKRVRLVADKETNKPKGYAFIEFLHTRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVNQRHSGREADMISIFREQQQSRSEEPRAREDRHGDRDREVSREKGRDRDRERSREHSHERVRDRDYREDRHHRDRDRTRDRDRERDRDRGRDRDRARDRDRDRDRDRHRERDRDYDVGDTDRRSRDRESEYDRVESKHERDQHGERNREYEPEDDRGRHSQYEHGRRHADPDHDPEQYDHYHGDDRGDHYNQYHDHDRMEDDYHVGRATSESHEKEKSHGTDREYRRTERSHSREYDY 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00691 486 Gene3D - 132 257 IPR012677 -
Vian10g00691 486 FunFam U1 small nuclear ribonucleoprotein 70 kDa 132 257 - -
Vian10g00691 486 SMART rrm1_1 146 219 IPR000504 GO:0003723
Vian10g00691 486 Pfam U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 48 136 IPR022023 -
Vian10g00691 486 MobiDBLite consensus disorder prediction 268 486 - -
Vian10g00691 486 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 147 216 IPR000504 GO:0003723
Vian10g00691 486 MobiDBLite consensus disorder prediction 228 486 - -
Vian10g00691 486 CDD RRM_snRNP70 144 234 IPR034143 GO:0030619
Vian10g00691 486 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 145 223 IPR000504 GO:0003723
Vian10g00691 486 SUPERFAMILY RNA-binding domain, RBD 133 245 IPR035979 GO:0003676
Vian10g00691 486 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 66 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00691 Vian-Chr10 6664758 6668923 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00691 147 193 C2H2 Transcription Factor Family AT2G19380 42.553 2.51e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00691 K11093 - gmx:100800903 655.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00691 10 6664758 6668923 Vian10g00691 10 6664758 6668923 ECH