Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00690 ATGTCTTCCTCTCCTCACAACAGTTCTCCAGATAATGAAATACCTGATGATTCCACCCCAGACAACAGCACCCCGGACAACAGCACCCCTGATGACGCTGACAACTCTTCTTCAACACCATCAAATTCATCACCGCCACCATCTCCACCGCCACCTTCATCGCCACCTCCATCTCCTCCACAATCATCTTCATCTCCACCTCCGCCAACCCCATCAGAAAAGTCCTCTCCTTCCCCTCCAACTTCAACCAATCCAAGCCCGCCATCACCCAATACTTCCCCACAGACACCTTCTCCACCCGCTTCATCACACTCTCCTCCCTCTTTTAAATCACCCACTCCTCCACACAAATCATTGCAACCTCCACCCGCTTCAAAAAATAGTGGCAGTGGCAGTAGCGGTAGTGGTAAACATGGAAACAGCGATAGCAGTGATCGTGGCAGCCACGATAACAGTAAAGCCATAGTTGGAGCAGTGCTTGGGGTGGGGAGCGTGCTTCTTGTTTTGGTCATCGTCTGCGTTATCTGTTCCAGGAAGAAGAAAAAGAAGAGAATGTACTATTACGGAGAGCAATCATTCGGAAAAGGGAATAACAACTATTACAATAGTGGGCAACACCAGGGTTATTACGGAGGTCCACACGGGGACCATGTTGTGAGGGTGCAAAACGGAATGGTTCCCGGTGGTGGTGGTGGTGGGGGTGGGGGTGGGGGTGGTGGTGGAGGTGGGTGGGGTGCACCACCTCCTCCTATGATGCATAGCGCTGATATGAGCTCCAACTACTCGACGGGACCACCCCCTTTGCCTCCTCCCTCACCAACCCTTGCTCTAGGCCTCAAAGGTGGCACCTTTACTTATGAGGAACTATCTGCTGCCACCAATGGATTCGCTGATTCAAAACTGATAGGACAGGGTGGCTTCGGTTATGTCCACATGGGTGTGTTGCCTAACGGAAAGGAAGTGGCAGTTAAGAGTCTAAAAGCAGGAAGTGGACAGGGAGAACGAGAGTTCCAAGCTGAGATTGACATCATCAGTCGTGTCCATCATCGCCATCTTGTGTCACTCGTTGGATACTCTATTTCTGGCGGCCAGAGAATGTTGGTCTATGAATTTATTCCCAATAAAACCTTGGAATATCACCTTCATGGAAAGGGAAGGCCTACAATGGATTGGCCTACCAGAATGCGAATTGCGATAGGATCAGCCAAAGGACTGGCTTATCTTCATGAAGATTGTCATCCTCGTATAATCCATCGTGATATTAAAGCTGCGAATGTCCTCATTGATGATAGCTTCGAGGCAAAGGTTGCTGATTTTGGATTGGCTAAGTTGACCACCGATAATAATACTCATGTATCGACTCGAGTCATGGGAACTTTCGGGTACCTAGCCCCAGAATATGCATCAAGTGGAAAATTGACTGAGAAGTCTGACGTTTTCTCATTTGGGGTCATGCTATTGGAGCTCATAACTGGGAGGCGACCTGTGGATCACACAAGTGCCATGGATGACAGCTTAGTAGATTGGGCTCGACCACTACTGAATCGTGGATTGGAAGAGGATGGCAACTTTGGAGAGTTGGTTGATCCATTCTTGGAGGGAAACTACAATCCTCAAGAATTGGCTAGGATGGCAGCTTGTGCTGCTGCTAGCATTCGACATTCTTCCAAGAAACGTGCAAAAATGAGCCAGATTGTAAGAATATTGGAAGGAGATGTGTCGCTGGATGATTTGAAAGATGGGATGAAGACAGGGCAGAGTACTGTTTTCAATTCTTCATCTGGGTCAGATCAGTATGATACAATGCAGTACAATGCAGACATGGAAAAGTTTAGAAAGGCAGTGTTTTCTAGCCAGGAATTTGGCATGAGCAGTGGTGGCTCTAGTAGTGAAGTGAGCCAGAAACAGAGGCTTTAG 1917 0.4825 MSSSPHNSSPDNEIPDDSTPDNSTPDNSTPDDADNSSSTPSNSSPPPSPPPPSSPPPSPPQSSSSPPPPTPSEKSSPSPPTSTNPSPPSPNTSPQTPSPPASSHSPPSFKSPTPPHKSLQPPPASKNSGSGSSGSGKHGNSDSSDRGSHDNSKAIVGAVLGVGSVLLVLVIVCVICSRKKKKKRMYYYGEQSFGKGNNNYYNSGQHQGYYGGPHGDHVVRVQNGMVPGGGGGGGGGGGGGGGGWGAPPPPMMHSADMSSNYSTGPPPLPPPSPTLALGLKGGTFTYEELSAATNGFADSKLIGQGGFGYVHMGVLPNGKEVAVKSLKAGSGQGEREFQAEIDIISRVHHRHLVSLVGYSISGGQRMLVYEFIPNKTLEYHLHGKGRPTMDWPTRMRIAIGSAKGLAYLHEDCHPRIIHRDIKAANVLIDDSFEAKVADFGLAKLTTDNNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGRRPVDHTSAMDDSLVDWARPLLNRGLEEDGNFGELVDPFLEGNYNPQELARMAACAAASIRHSSKKRAKMSQIVRILEGDVSLDDLKDGMKTGQSTVFNSSSGSDQYDTMQYNADMEKFRKAVFSSQEFGMSSGGSSSEVSQKQRL 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00690 638 PRINTS Proline rich extensin signature 18 30 - -
Vian10g00690 638 PRINTS Proline rich extensin signature 40 61 - -
Vian10g00690 638 PRINTS Proline rich extensin signature 64 80 - -
Vian10g00690 638 PRINTS Proline rich extensin signature 84 101 - -
Vian10g00690 638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 416 428 IPR008271 GO:0004672|GO:0006468
Vian10g00690 638 Pfam Protein tyrosine and serine/threonine kinase 300 501 IPR001245 GO:0004672|GO:0006468
Vian10g00690 638 MobiDBLite consensus disorder prediction 1 41 - -
Vian10g00690 638 ProSitePatterns Protein kinases ATP-binding region signature. 302 324 IPR017441 GO:0005524
Vian10g00690 638 SUPERFAMILY Protein kinase-like (PK-like) 275 569 IPR011009 -
Vian10g00690 638 MobiDBLite consensus disorder prediction 42 121 - -
Vian10g00690 638 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 161 615 IPR047117 -
Vian10g00690 638 FunFam proline-rich receptor-like protein kinase PERK1 274 371 - -
Vian10g00690 638 MobiDBLite consensus disorder prediction 122 141 - -
Vian10g00690 638 SMART serkin_6 296 532 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g00690 638 MobiDBLite consensus disorder prediction 1 150 - -
Vian10g00690 638 FunFam Proline-rich receptor-like protein kinase PERK1 372 580 - -
Vian10g00690 638 Gene3D Transferase(Phosphotransferase) domain 1 372 586 - -
Vian10g00690 638 ProSiteProfiles Protein kinase domain profile. 296 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g00690 638 MobiDBLite consensus disorder prediction 228 267 - -
Vian10g00690 638 Gene3D Phosphorylase Kinase; domain 1 276 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00690 Vian-Chr10 6656819 6660056 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00690 99 635 Trihelix Transcription Factor Family AT1G70460 47.005 4.97e-151 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vian10g00690 PK_Tyr_Ser-Thr 1.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00690 - - gmx:100777163 798.505