Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00688 ATGTTTGCACAGGAAAAGGTTCATAGACATTGGAGGAATCTTGAGCCTGTTTTTCCAACGACTAAGAGAGTATTATCAGGGAATGAGTATTTGCAGGTAGGGGAAAACGTCAATAAGCTGTCTTTGAGAATTGACAATCCTTTATGTAAATTCAATGGGTTCCCTGAAGCTACACTAGAGGAGGATCAATTCAATGATGTGGACATATCAGCAGCAGAAAGTACTAGGATTCCAAACGAGGAAAAACTACCAACATATACGGCTTGGGTATATGTGGCCAGGATGACACTCGAGGAATATGGGTCTACTAAGGAGGTATTGGGTATCATTGAAGAGATTTTTGAGACTGACGATTCACAAATTCAGATCTTTGACTGTGCTATCCATGGCACTGATCAACCTTTAATATATCTTGATAAAGGGATTACACCAATGGAAGAGGACACGACATTGCCTCCTAATGAGCCTCAGAGTTCTTGTGAGCTGAAGAGAACCTCAGATGATATAATTATCGATATTGGCAATCATTACAGTGAACTAAATTTGGATGCTAGTGACAATGAAAATCACACAACATCTAGTGCATCTTTGGAAAGTCTTGGTGAACATGCTTCAAAGAAATTACCAGTTTCTGGTAGCTTTGACCATGGTGAGCGGGACAAAGGAGTTATGAATGGACAAGAAGATCTTACAAAGGAGATAGAATTTAATGAGATGCCCATTTCCAAGGACGTGCAAACTGATAAGATGATAATTGACTCAGATTGGAGACCTCTAGAGAGAGATTTATATTTGAAGGGAGTAGAAATGTTTGGAAAAAATAGTTGCCTCATAGCCGCTACTTTTTTTCATGGCTTGAAGACTTGCTTGCAAGTAGCAAGCTATATGTTTTCTGGTGGAGAGTCAATGATCCATGGATCCACAACAAATTCAATCGTGGATAGAAATGAAAATATCAATGCAGAGTTCACAGACCTAGAAATGTCATCAAGATCAAGATCACAACGGAAAAAGGGAAAACCTAGGAAGTTCAACTATACTCGAAAGTCTGCCGATGGAGAAAAATTGCTTATGGGCAAAACATGTACAATAAGCAATATACTCCTTGTGGATGTCATGGAATGTGTGGAAAGGAATGCTCTTGTCTTCTTAATGGAACTTGCTGTGAAAAATATTGTGGGTGTTCAAAGATATGCACAAATCGATTCAGAGGATGTCATTGTACCAAGAGTCAATGCAGAAGTCGATTATGTCCGTGCTTTGCAGCCAATCGTGAATGTGACCCAGATGTCTGTCGAAATTGTTGGTTGCGGCGATGGTTCATTAGGGGAGCCACCTCGACGTGGAGATAGCAAATGCGGAAATATGAATATTCTTTTAGGACAAAAAGAGAGGTGGGTTATTGATGCACATCGCCTAGGAGACAAATTAAAATTTGCGAACCATTCATCAAAACCCAACTGCTATGCAAAGGTGATGCTTGTTGGAGGAGAACATCGAGTGGGAATATATGCCAAGGAAAACATTGAAGCTGGTGATGAGATTTTTTACGACTATTGGTATGATCTAGAATGTGCACCATCATGGGCTCTTCCACCAGAAGACAATGCTTTAAAAAAAGATGAATTAGGAATTTCTCAGAGCAAGGCAAAGAAACGTTAG 1662 0.3977 MFAQEKVHRHWRNLEPVFPTTKRVLSGNEYLQVGENVNKLSLRIDNPLCKFNGFPEATLEEDQFNDVDISAAESTRIPNEEKLPTYTAWVYVARMTLEEYGSTKEVLGIIEEIFETDDSQIQIFDCAIHGTDQPLIYLDKGITPMEEDTTLPPNEPQSSCELKRTSDDIIIDIGNHYSELNLDASDNENHTTSSASLESLGEHASKKLPVSGSFDHGERDKGVMNGQEDLTKEIEFNEMPISKDVQTDKMIIDSDWRPLERDLYLKGVEMFGKNSCLIAATFFHGLKTCLQVASYMFSGGESMIHGSTTNSIVDRNENINAEFTDLEMSSRSRSQRKKGKPRKFNYTRKSADGEKLLMGKTCTISNILLVDVMECVERNALVFLMELAVKNIVGVQRYAQIDSEDVIVPRVNAEVDYVRALQPIVNVTQMSVEIVGCGDGSLGEPPRRGDSKCGNMNILLGQKERWVIDAHRLGDKLKFANHSSKPNCYAKVMLVGGEHRVGIYAKENIEAGDEIFYDYWYDLECAPSWALPPEDNALKKDELGISQSKAKKR 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00688 553 ProSiteProfiles SET domain profile. 119 520 IPR001214 GO:0005515
Vian10g00688 553 Pfam SET domain 324 519 IPR001214 GO:0005515
Vian10g00688 553 SUPERFAMILY SET domain 463 523 IPR046341 -
Vian10g00688 553 Gene3D SET domain 439 524 IPR046341 -
Vian10g00688 553 SMART set_7 404 526 IPR001214 GO:0005515
Vian10g00688 553 MobiDBLite consensus disorder prediction 182 222 - -
Vian10g00688 553 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 123 352 IPR045318 GO:0006338|GO:0042054
Vian10g00688 553 MobiDBLite consensus disorder prediction 182 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00688 Vian-Chr10 6615716 6642214 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vian10g00688 SET 6.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00688 - - vra:106776653 407.142