Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00678 ATGCCGGTTGACTTGGACAATGTTTCCACGGCTTCAGGGGAAGCTAGCGTGTCTTCCTCTGGCAATCAGACAGTGCCCCCAAAACCGACGACAAAGAAGAAGCGAAACCTTCCAGGAATGCCAGATCCGGATGCTGAGGTGATTGCTCTGTCTCCGAAGACCCTGATGGCGACGAACCGGTTCGTGTGTGAAATATGCAACAAGGGGTTTCAGAGGGACCAGAACCTTCAGCTTCATCGGAGGGGTCACAATCTGCCGTGGAAGCTGAGGCAGAGGTCGAGCAAGGAGGTGAGGAAGAGGGTGTACGTGTGTCCCGAACCGACGTGCGTTCACCACGATCCTTCTAGAGCTTTGGGGGATCTCACGGGGATTAAGAAGCACTTCTGCAGAAAACACGGCGAGAAGAAGTGGAAATGCGACAAGTGCTCCAAGAAATACGCGGTTCAATCCGATTGGAAGGCTCACTCCAAGATTTGCGGTACCCGAGAGTATAAATGCGATTGTGGTACCCTCTTCTCAAGGAGGGATAGCTTCATCACGCATAGGGCTTTTTGTGATGCGTTGGCAGAGGAAAGTGCGAGATCTCAGCCTCAGACTGCTGCAAAGGCTAGTTCCGAGTCGGATTCGAAGGCTGTGACCGGTGATTCGTCGCCTCCCGCAGCTGCGGCTGCGGCTACGCCTCCACCGCCTTCTGCACCGCCAGCTAGTTCTAAGTCAAACAGTGTTGTCGTATCGTCGTCTGTTTTGCAGACACCAAATCCAGAGTTGCCAGAAAATTCCCCACAAGTCATAGAAGAACCGCAGGCCAATCCTGCTGTGAGTGGAAGCTGTAGCGGCACCAGTACCAGTACCAGCACAACTAGCTCAACAAGCAACAGCAATGGTGCTGCTAGCAGCAGTGTCTTTGCAAGCCTGTTTGCTTCATCAACAGCATCCGCAACTGCGAGCCTCCAATCTCAAACACCAGCATTCACTGACCTAATCAGGGCCATGGGGCATCCAGATCATCCAGCAGACCTCTCACGGCCTTCATCTTCGGAGCCCATTTCTCTGTGCCTTGCTACCAATCACGGGTCATCCATTTTTGGAACAGGATTGCAGGAGTGCCGTCAATATGCCCCACCGCCACAGCCAGCCATGTCTGCTACTGCTTTGCTGCAAAAAGCCGCCCAAATGGGTGCAGCTGCTACAAATGCCTCTTTTCTTCGTGGATTAGGCATAGTGTCTTCTGCGTCAACCTCATCAGGTCAGCAAGATAGTTTACAATGGGGTCAGCAGCCAGGGGAACCGGAGGGTGCCTCAGTTCCTGCAGGTCTTGGACTCGGGCTTCCCTGTGACGGCAGCTCTGGACTAAAGGAGTTGATGATGGGGACTCCCTCTGTGTTTGGTCCAAAGCAGACCACCCTTGATTTTCTCGGGCTGGGAATGGCCGCTGGGGGCAACCCCGGTGGAGGCTTATCGGCACTCATCACTTCAATTGGTGGCAGTCTGGATGTTACTGCTGCAGCAGCAGCAGCAGCATCCTTTGGTAATGGAGAATTCCCTGGCAAGGATATTGGGAGGAGTACTTGA 1572 0.5369 MPVDLDNVSTASGEASVSSSGNQTVPPKPTTKKKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARSQPQTAAKASSESDSKAVTGDSSPPAAAAAATPPPPSAPPASSKSNSVVVSSSVLQTPNPELPENSPQVIEEPQANPAVSGSCSGTSTSTSTTSSTSNSNGAASSSVFASLFASSTASATASLQSQTPAFTDLIRAMGHPDHPADLSRPSSSEPISLCLATNHGSSIFGTGLQECRQYAPPPQPAMSATALLQKAAQMGAAATNASFLRGLGIVSSASTSSGQQDSLQWGQQPGEPEGASVPAGLGLGLPCDGSSGLKELMMGTPSVFGPKQTTLDFLGLGMAAGGNPGGGLSALITSIGGSLDVTAAAAAAASFGNGEFPGKDIGRST 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00678 523 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 481 IPR031140 -
Vian10g00678 523 FunFam protein indeterminate-domain 5, chloroplastic-like 115 194 - -
Vian10g00678 523 FunFam protein indeterminate-domain 12-like 40 108 - -
Vian10g00678 523 MobiDBLite consensus disorder prediction 9 30 - -
Vian10g00678 523 Gene3D Classic Zinc Finger 41 107 - -
Vian10g00678 523 SMART c2h2final6 61 83 IPR013087 -
Vian10g00678 523 SMART c2h2final6 102 132 IPR013087 -
Vian10g00678 523 SMART c2h2final6 137 157 IPR013087 -
Vian10g00678 523 MobiDBLite consensus disorder prediction 413 439 - -
Vian10g00678 523 MobiDBLite consensus disorder prediction 413 427 - -
Vian10g00678 523 MobiDBLite consensus disorder prediction 191 295 - -
Vian10g00678 523 MobiDBLite consensus disorder prediction 1 43 - -
Vian10g00678 523 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Vian10g00678 523 MobiDBLite consensus disorder prediction 192 214 - -
Vian10g00678 523 Gene3D Classic Zinc Finger 115 195 - -
Vian10g00678 523 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Vian10g00678 523 MobiDBLite consensus disorder prediction 236 295 - -
Vian10g00678 523 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00678 Vian-Chr10 6531733 6534082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00678 1 523 IDZ Gene Family AT5G66730 59.926 0.0 547
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian10g00678 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00678 K25869 - gmx:100806404 796.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00678 10 6531733 6534082 Vian10g00678 10 6531733 6534082 ECH
Vian1g01756 1 20551486 20552956 Vian10g00678 10 6531733 6534082 ECH
Vian10g00678 10 6531733 6534082 Vian1g01756 1 20551486 20552956 PCT