Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00672 ATGCACACAAGCAAAGATAAAAGGGCTACAGTAATAACAACCAAAAGCCCCCTTCTTCAAGCTTCAACAATTCCTCTCCTCCATCATTCACATCACAGAGCACAACAAGATCACACCGCAACACCTTCTGGTAGTCTTCACCAAGCGATGAGAGTTCCCGTTCCCTCATCCCCACAGGCTAACCCAAAACCAACTAATAACCTACTCCGTACCATTGCACTTCCCAACCTCAACACCACGGGCCTCTGCTACGAGCCCACCTCTGTCCTCGACCTCTGCCGAAGCCCAAGCCCGGGCTCCGAAAAGCCCACCGATCACTCAGTTGTCGTCACGGACTCCCAAGATTGTCTGGACCTGGACGACCATGCGTTGCACAACTTGGATTGGGACTCCATCATGAAGGACTTGGGCTTACACGACGACTCTGGTGCTCCCCTCTTGAAGACTATTCCCCACCCCGACAACAACAATAACAACCCATGCGACGACTTCACAATCGCACCCTTCGACCACGCCATTGAATTCTCCACTCTCTCCGACATCTACTCCAACCAAAACCTTAGCTTCGATTTTAACCACCTAGTTCACGACTTCAGCAACCAACATCACAACAACGGCTTCGATTTCATCGAAGAGCTCATCCGCGCCGCGGATTGCTTCGACACCAAGCAGTTACACGTCGCACAGGTGATATTGGAGCGGCTCAATCAACGGCTTCGATCCCCCGTGGGAAAACCTCTCCAACGCGCAGCCTTTTACTTCAAAGAAGCTCTCCAGTCTCTTCTCTCCGGTTCGAACCGGACGCCCAGGATTTCCTCGCTGGTGGAAATCGTGCATGGCATCAGAACCTTCAAGGCCTTCTCCGGAATCTCGCCGATTCCAATGTTCTCGATATTCACCACCAACCAGGTGGTTCTCGATCACGCTGCGTGCTCCTTCATGCACGTTATCGACTTCGACATCGGCCTTGGGATCCAATACGCTTCTCTCATGAAGGAGATAGCGGAGAAGGCCACGGAATCGCCGCTTCTCCGAATCACCGCCGTCGTTCCCGAAGAGTACGCCGTCGAGAGCACGCTGGTACGCGAAAACCTCGCGCAGTTCGCTCTCGAACTCAGGATTGGCGTCCAGGTCGACTTCGTGCCACTCCGAACCTTCGAGACGCTCTCCTTTAAGGCAGTGAAGCTCGTCGACGGCGAGAGCACCACCGTGCTCCTTTCCCCAGTGATTTTCCGCCACCTCGGAAATGCTGCCGCGTTCTTGGCGGACTTGCGGCTGGTCTCTCCCAGCGTGGTGGTTTTGGTGGATAGCGAGGGATGGGCTGATATGGCCACAGCAGCAGCCTCGTCGTTCCGACGCGGCGTTGTGAGCAGTTTGGAGTACTACTCGATGATGTTGGAGTCGCTGGATGTGTCGACGGCTGGGGGAGGAGGGGAATGGGTGAGAAGAATCGAGATGATACATCTGCGACCGAAGATTTTGGCGGCGGTGGAGAGTTCATGGGGGCGGATGCCACCGTGGAGGGAGACCTTTTACAGCGCCGGAATGCGGCCGGTTCATTTGAGCCAGTTTGTGGATTTCCAAGCAGAGTGCTTGTTGGCCAAGTCGCAAATCAGAGGCTTCCACGTGGAAAAACGTCAGAACGAACTTATACTGTTCTGGCATGACAGAGCCATGGTTTCCTCGTCAGCTTGGCGGTTTTAG 1704 0.5446 MHTSKDKRATVITTKSPLLQASTIPLLHHSHHRAQQDHTATPSGSLHQAMRVPVPSSPQANPKPTNNLLRTIALPNLNTTGLCYEPTSVLDLCRSPSPGSEKPTDHSVVVTDSQDCLDLDDHALHNLDWDSIMKDLGLHDDSGAPLLKTIPHPDNNNNNPCDDFTIAPFDHAIEFSTLSDIYSNQNLSFDFNHLVHDFSNQHHNNGFDFIEELIRAADCFDTKQLHVAQVILERLNQRLRSPVGKPLQRAAFYFKEALQSLLSGSNRTPRISSLVEIVHGIRTFKAFSGISPIPMFSIFTTNQVVLDHAACSFMHVIDFDIGLGIQYASLMKEIAEKATESPLLRITAVVPEEYAVESTLVRENLAQFALELRIGVQVDFVPLRTFETLSFKAVKLVDGESTTVLLSPVIFRHLGNAAAFLADLRLVSPSVVVLVDSEGWADMATAAASSFRRGVVSSLEYYSMMLESLDVSTAGGGGEWVRRIEMIHLRPKILAAVESSWGRMPPWRETFYSAGMRPVHLSQFVDFQAECLLAKSQIRGFHVEKRQNELILFWHDRAMVSSSAWRF 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00672 567 Pfam GRAS domain family 210 566 IPR005202 -
Vian10g00672 567 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 193 560 IPR005202 -
Vian10g00672 567 ProSiteProfiles GRAS family profile. 200 566 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00672 Vian-Chr10 6488493 6490196 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00672 117 567 GRAS Transcription Factor Family AT4G36710 54.008 9.84e-165 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vian10g00672 GRAS 9.9e-78 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00672 - - gmx:100807470 863.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00672 10 6488493 6490196 Vian10g00672 10 6488493 6490196 ECH
Vian10g00672 10 6488493 6490196 Vian1g01754 1 20515634 20517250 PCT