Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00670 ATGAATCATCGACCTTTCCAAGACAACATGATGTTCATCCCTCAGTTATACCCCGCCGATGCACCATACACTCAAATAATTGCTCAACAAGGGGAGAGTAAGAAGCCAAAACGCCGTCGTGGTAAGAAGAACAAAGGAGGAGAGAACGGTGCCTCCGAAGCCAACAGGAAGAGGAAGCTCAGTGCCGAGCAAGTTAATCTACTTGAGCAGAACTTTGGAAATGAACATAAACTTGAGTCTGAGAGGAAAGACAGGCTCGCATTGGAGCTTGGTCTGGACCCTCGACAAGTTGCAGTGTGGTTTCAAAACAGAAGAGCTCGCTGGAAGAACAAAAAACTAGAAGAAGAGTACTCACACCTTAAAAAATCCCACGAAGCCAACTTGCTCGAGAAATGTCGATTGGAGACCGAGGTATTGAAGCTGAAAGATCAACTTTCTGAGGCGGAGAAGGAGATTCAGAGGCTGTTGGAGAGTGGTGATAGAGTTCCGAGTAACAGCTCTAGCTCGTCACAGTCACAATCACAATCACAATCTATGGAAGCGGTGGACCCAGCATTCTTCGGGGTGTTCGGAGTTGATGGGTATGATGATGATGTGTTTTACGGGCCCGAGACTCACTGCATCAACGCCTTGGAATGGATTAATCTGTATATGTAA 657 0.4658 MNHRPFQDNMMFIPQLYPADAPYTQIIAQQGESKKPKRRRGKKNKGGENGASEANRKRKLSAEQVNLLEQNFGNEHKLESERKDRLALELGLDPRQVAVWFQNRRARWKNKKLEEEYSHLKKSHEANLLEKCRLETEVLKLKDQLSEAEKEIQRLLESGDRVPSNSSSSSQSQSQSQSMEAVDPAFFGVFGVDGYDDDVFYGPETHCINALEWINLYM 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00670 218 CDD homeodomain 56 112 IPR001356 GO:0003677
Vian10g00670 218 PRINTS Lambda-repressor HTH signature 82 91 IPR000047 GO:0003677
Vian10g00670 218 PRINTS Lambda-repressor HTH signature 91 107 IPR000047 GO:0003677
Vian10g00670 218 MobiDBLite consensus disorder prediction 45 61 - -
Vian10g00670 218 MobiDBLite consensus disorder prediction 28 61 - -
Vian10g00670 218 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 43 176 IPR045224 GO:0003700
Vian10g00670 218 SUPERFAMILY Homeodomain-like 56 120 IPR009057 -
Vian10g00670 218 ProSitePatterns 'Homeobox' domain signature. 86 109 IPR017970 GO:0000981|GO:0006355
Vian10g00670 218 Coils Coil 103 123 - -
Vian10g00670 218 ProSiteProfiles 'Homeobox' domain profile. 51 111 IPR001356 GO:0003677
Vian10g00670 218 Coils Coil 51 71 - -
Vian10g00670 218 MobiDBLite consensus disorder prediction 156 177 - -
Vian10g00670 218 MobiDBLite consensus disorder prediction 159 177 - -
Vian10g00670 218 FunFam homeobox-leucine zipper protein ATHB-40 50 119 - -
Vian10g00670 218 Coils Coil 138 158 - -
Vian10g00670 218 Gene3D - 47 119 - -
Vian10g00670 218 Pfam Homeodomain 57 110 IPR001356 GO:0003677
Vian10g00670 218 SMART HOX_1 54 115 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00670 Vian-Chr10 6470572 6472358 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00670 1 218 Homeobox Transcription Factor Family AT4G36740 58.222 9.39e-72 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vian10g00670 Homeodomain 2.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00670 K09338 - gmx:100809616 320.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00670 10 6470572 6472358 Vian10g00670 10 6470572 6472358 ECH
Vian10g00670 10 6470572 6472358 Vian1g01750 1 20440844 20442424 PCT