Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00655 ATGACGAGTGGTTTTGGGGAATCAACGAGAGCGTCTGCTCCGAGCCCGTCATGCTCGGGTAACAGTTCTAACGATGCTGGTGATTTCGAGTGCAACATATGCTTCGATTTGGCGCAAGAGCCCGTGATCACACTCTGTGGTCACCTATTCTGTTGGCCATGCCTTTATAGGTGGCTCCATCTTCATTCCCATTCTCAGGAGTGCCCTGTTTGCAAGGCCCTTGTGCAGGAGGAGAAATTGGTGCCTCTTTATGGAAGGGGCAAAACACAGACTGATCCCAGGACCAAATCATATCCTGGAATGGAGATCCCTCACCGTCCTTCGGGGCAGAGGCCGCAAACTGCGCCGCCCCCACCTCCTCCTGAGAATAACCCTTTTGGGAGTTATGGGTTTGGACTCATGGGAGGGTTCATTCCCATGGCAACTGCCAGATTTGGGAACTTCACACTTTCCACCGCCTTTGCTGGGTTTATCCCATCACTGCTCAACATTCATTTCCATGGCTTTCAGGATGCCACTGTCTATGGGACAACTTCTGGTTATCCCTTTGGGTTTAATAGCTTTCACGGAGGGGGCGCGCGGGGGTATCATCAGGCAACTGGGGGCCAAGTGCAGCGGCAGGAAGACAACGTTTTGAAGAATCTGCTTATGTTGATTGGGTTTCTTGTCCTCCTTACTGTTATTTTTGTGTGGTAA 696 0.5129 MTSGFGESTRASAPSPSCSGNSSNDAGDFECNICFDLAQEPVITLCGHLFCWPCLYRWLHLHSHSQECPVCKALVQEEKLVPLYGRGKTQTDPRTKSYPGMEIPHRPSGQRPQTAPPPPPPENNPFGSYGFGLMGGFIPMATARFGNFTLSTAFAGFIPSLLNIHFHGFQDATVYGTTSGYPFGFNSFHGGGARGYHQATGGQVQRQEDNVLKNLLMLIGFLVLLTVIFVW 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00655 231 Pfam Zinc finger, C3HC4 type (RING finger) 30 71 - -
Vian10g00655 231 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
Vian10g00655 231 MobiDBLite consensus disorder prediction 1 20 - -
Vian10g00655 231 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 19 225 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vian10g00655 231 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 14 85 - -
Vian10g00655 231 SUPERFAMILY RING/U-box 27 84 - -
Vian10g00655 231 ProSiteProfiles Zinc finger RING-type profile. 31 72 IPR001841 -
Vian10g00655 231 MobiDBLite consensus disorder prediction 85 125 - -
Vian10g00655 231 SMART ring_2 31 71 IPR001841 -
Vian10g00655 231 MobiDBLite consensus disorder prediction 110 125 - -
Vian10g00655 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 85 IPR013083 -
Vian10g00655 231 CDD RING-HC_AtRMA-like 29 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00655 Vian-Chr10 6328140 6328835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00655 21 229 C3H Transcription Factor Family AT2G23780 62.037 2.22e-85 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00655 K10666 - gmx:100814783 430.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00655 10 6328140 6328835 Vian10g00655 10 6328140 6328835 ECH
Vian4g02295 4 39786789 39787484 Vian10g00655 10 6328140 6328835 ECH