Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00652 ATGACAAGCAACATTGGTAAAGACCTCGTTCGTTATAAAGTTATTGACCCTAGTGATGATCCTATAAACCCTAAACCTGGTACCTTGAGACATGGAGCTTTTGTAATTCAACGTAAAGTTTGGATCACATTCCAAAGAGACATGCATATTAGACTCGAAAGACCCCTTCTTATTAGTAGTTTTACAACCATTGATGGTCGAGGCGTTAATGTTGACATTGCTGAAAATGCATGTTTAATGATCTTTAAGGCCACAAATGTAATCATCCATAACATTCGACTTCATCATTGCAAACCTCAAGCTCCAGGGGTTGTGATGGGACCTGAAGGAAAGGTGATTCCTTTGGGCCATGTAGATGGAGATGCAATAAGATTGATTACTGCTTCAAATATTTGGATTGATCACAATACACTTTACAATTGTCAAGATAGCTTACTTGATGTAACACGGGGTTCAACTAATGTGACTATATCTAATAATTGGTTTAGAAATCAAGACAAAGTTATGCTTCTTGGACATGATGATGGTTATATAAGAGACCAAAACATGAAGGTGACCATTACATACAACCACTTCGGACCTAATTGCAATCAACGCATGCCTAGGATTCGTCATGGGTATGCACATGTAGTCAACAATCTTTACTTAGGATGGGTGCAATATGCCATTGGTGGAAGTATGAGACCTAGTCTCAAAAGTGAAGCTAATCTCTTTATAGCACCAACAAAAGGGAGTAAGGAGGTAACATGGAGAAAGAATAGCCACACAAATGGAAATGCATGGGAGTTTTATTCAGTGAAAGATGCATTTGAGAATGGAGCTTCTTTCACAATGACAAAAGGAGGACAAGTGCCAAAACCAAACTACAGTGAAGAACAACGTTTTAATATTGCTAATGTCAAGTATTCAAATACTGTGGCTGTGTTCTATTATCAGCTTTATGTTCATTTGTCTGTATCGTCAACGACAGGATTGGTTGATTTTGAATATCTCACCTTAAGTAATGCAATTCCTGCACTGATTTTCTTTGGTTGA 1035 0.3768 MTSNIGKDLVRYKVIDPSDDPINPKPGTLRHGAFVIQRKVWITFQRDMHIRLERPLLISSFTTIDGRGVNVDIAENACLMIFKATNVIIHNIRLHHCKPQAPGVVMGPEGKVIPLGHVDGDAIRLITASNIWIDHNTLYNCQDSLLDVTRGSTNVTISNNWFRNQDKVMLLGHDDGYIRDQNMKVTITYNHFGPNCNQRMPRIRHGYAHVVNNLYLGWVQYAIGGSMRPSLKSEANLFIAPTKGSKEVTWRKNSHTNGNAWEFYSVKDAFENGASFTMTKGGQVPKPNYSEEQRFNIANVKYSNTVAVFYYQLYVHLSVSSTTGLVDFEYLTLSNAIPALIFFG 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00652 344 PANTHER PECTATE LYASE 18-RELATED 6 298 IPR045032 GO:0030570
Vian10g00652 344 SUPERFAMILY Pectin lyase-like 12 277 IPR011050 -
Vian10g00652 344 PRINTS Pollen allergen Amb family signature 55 71 IPR018082 -
Vian10g00652 344 PRINTS Pollen allergen Amb family signature 261 285 IPR018082 -
Vian10g00652 344 PRINTS Pollen allergen Amb family signature 18 43 IPR018082 -
Vian10g00652 344 PRINTS Pollen allergen Amb family signature 199 218 IPR018082 -
Vian10g00652 344 PRINTS Pollen allergen Amb family signature 119 140 IPR018082 -
Vian10g00652 344 PRINTS Pollen allergen Amb family signature 221 240 IPR018082 -
Vian10g00652 344 SMART amb_all 47 244 IPR002022 -
Vian10g00652 344 Gene3D - 4 309 IPR012334 -
Vian10g00652 344 Pfam Pectate lyase 58 238 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00652 Vian-Chr10 6283284 6286989 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00652 1 248 Polysaccharide Lyase AT5G09280 68.145 1.75e-137 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00652 K01728 - gmx:100780437 556.984