Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00651 ATGCATCTCTTTCCCTTCACTACCATAATCATCTTCACCGTTTTGATTCACAACTTCTCTCTGATTCTGGGGCAGCAACCTTATATTGGTTTAGGAACAGTAGCATGCCCTCGAAGAGGTAACAGAAACTCTATTCGTGGATACACTTGTAATGGTGCAAACAGCTGCCAAGCATTCCTTACCTTCAGATCTCAACCCATTTACGACTCTGTCTCCACAATATCTACTTTATTGGGTTCTGACCCCTCCCAACTTGCTAAAATAAATTCCGTTTCCCTGAATGACACCTTCGAAACAAACAAGTTGGTGCTTGTTCCGGTCAACTGTTCCTGTGCAGGTGAGTATTATCAAACAAACACATCCTATGTGTTCCAGAATGCAGAAACTTACTTCTTGATTGCTAACAACACTTTCGAGGGCCTCACAACATGTCAAGCTTTGCAGAATCAAAACCACAACCCAGCAAACATATACCCCGGCAGAAAACTTCTAGTGCCTCTCAGATGTGCTTGCCCCACAAAAAACCAAACCCAGAAAGGCATCAGGTACCTCTTAAGCTACTTGGTGAATTGGGGTGATTCTGTTTCCCTCATTGCTGACAAATTTGGTGTTGGCTCTGTGACCGCTCTTGAGGCTAATAACCTCACTTTGACACAATCCGTGATCTATCCCTTTACTACACTTCTAATTCCCCTTCATGATAAGCCCTCAAGTTCTCAAACCGTTTCTCCAGCTCAACTTACGCCACCACCCTCATCACCCCCCTCTTCTCATCAAAAGAAAACATGGGTGTATGTTGTTGTTGGAGTTGTTGCAGGAGCTGTTGCCTTAACATCAGCTCTCTGTGCTGTCATTTTCTTCACACGCAGGAGAAAAAATAGAAACGAAGATGAGTCGGTGGTAGTGTCAAAGAGTTTTGAGGCAACTAAGAAAAATCCACCAATGAGTGTAAATGAAAAATTGTCAGAGATCATATCTGGCATAGCTCAATCGTTCAAGGTTTATGATTTTGAGGACCTAAAGCGAGCAACAGATAACTTTAGTCCTAGCTACTGGATCAAAGGGTCTGTTTATCGCGGAGTGATTAATGGTGATTTGGCTGCAATTAAAAAGATAGAAGGTGATGTGACAAAGGAGTTGGAGATACTGAGCAAAATCAACCATTCTAATGTTGTACGCCTTTCCGGTGTTAGCTTCCACGAGGGACGATGGTACTTTGTTTATGAGTATGCTGCTAATGGAGATTTGAGTGAATGGATCTACTTCAACAACGCGGATGGGAAGTTTCTGAGTTGGACGCAGAGAATACAGATTGCATTGGATGTGGCCACAGGACTTGATTATCTTCACAGTTTCAGTTCTCCTTATATCCACAAGGATATTAAGAGTACTAACATTCTTCTGGATGGTGACTTCAGAGGAAAGGTCGCAAATTTAAGCCTTGTGAGGCGTGTGGAAGGAGGGGACGACCAGTTTCCTGCCACTAGGCACATTGTTGGGACAAGAGGCTACATGGCTCCCGAGTATTTGGAACATGGTCTTGTGTCTACAAAGCTTGTTGTGTATGCTTTTGGGGTAGTGATGCTGGAAATGATCACAGGAAAAGAGGCTGCTGCTATTGTAACAGAAGACGAGACAAATTTGTCACATGTTTTGCGCGTCATGCTTTGTGAGGAGAGGTTGAAGGAGTTTGTGGATCCCTCTTTGAGAGAAAATTTTCCATTTGAACTTGGTATGTTTGTGGTTGAGATGATTGATAATTGCATATCGAATGATCCAGCAAGTCGTCCTAGTGTGCCTGAGATTGTGCAATCTCTGTCAAGAACCCTGAATTCTTCATTGAGTTGGGAAAGGTCAATGAATGTCCCACGAAGCTAA 1878 0.4313 MHLFPFTTIIIFTVLIHNFSLILGQQPYIGLGTVACPRRGNRNSIRGYTCNGANSCQAFLTFRSQPIYDSVSTISTLLGSDPSQLAKINSVSLNDTFETNKLVLVPVNCSCAGEYYQTNTSYVFQNAETYFLIANNTFEGLTTCQALQNQNHNPANIYPGRKLLVPLRCACPTKNQTQKGIRYLLSYLVNWGDSVSLIADKFGVGSVTALEANNLTLTQSVIYPFTTLLIPLHDKPSSSQTVSPAQLTPPPSSPPSSHQKKTWVYVVVGVVAGAVALTSALCAVIFFTRRRKNRNEDESVVVSKSFEATKKNPPMSVNEKLSEIISGIAQSFKVYDFEDLKRATDNFSPSYWIKGSVYRGVINGDLAAIKKIEGDVTKELEILSKINHSNVVRLSGVSFHEGRWYFVYEYAANGDLSEWIYFNNADGKFLSWTQRIQIALDVATGLDYLHSFSSPYIHKDIKSTNILLDGDFRGKVANLSLVRRVEGGDDQFPATRHIVGTRGYMAPEYLEHGLVSTKLVVYAFGVVMLEMITGKEAAAIVTEDETNLSHVLRVMLCEERLKEFVDPSLRENFPFELGMFVVEMIDNCISNDPASRPSVPEIVQSLSRTLNSSLSWERSMNVPRS 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00651 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672|GO:0006468
Vian10g00651 625 Pfam Protein kinase domain 357 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g00651 625 Pfam LysM domain 187 231 IPR018392 -
Vian10g00651 625 Pfam LysM domain 122 166 IPR018392 -
Vian10g00651 625 ProSiteProfiles Protein kinase domain profile. 286 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g00651 625 Gene3D Phosphorylase Kinase; domain 1 318 410 - -
Vian10g00651 625 Gene3D LysM domain 185 243 IPR036779 -
Vian10g00651 625 ProSiteProfiles LysM domain profile. 120 165 IPR018392 -
Vian10g00651 625 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 9 618 - -
Vian10g00651 625 FunFam PTI1-like tyrosine-protein kinase 3 411 620 - -
Vian10g00651 625 ProSiteProfiles LysM domain profile. 185 230 IPR018392 -
Vian10g00651 625 SUPERFAMILY Protein kinase-like (PK-like) 330 606 IPR011009 -
Vian10g00651 625 Gene3D Transferase(Phosphotransferase) domain 1 411 619 - -
Vian10g00651 625 SMART serkin_6 352 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g00651 625 SMART LysM_2 121 166 IPR018392 -
Vian10g00651 625 SMART LysM_2 186 231 IPR018392 -
Vian10g00651 625 MobiDBLite consensus disorder prediction 239 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00651 Vian-Chr10 6270919 6272796 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00651 3 619 Receptor kinase-like Gene Family AT2G23770 41.680 1.95e-168 492
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vian10g00651 Pkinase 1.4e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00651 - - gmx:100779907 1026.93