Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00646 ATGTCCCAAGATTTCCAACCAGGAATCTTCAGCTTCCCGAATGGGTTGGAGAGAGGAAGGGTGAGTCCACAGCAGCAGATCCGGAGGGACAAAGTAAGGTTGCAAGGAGGGTTCGAGGCAGCGCCATTGGTAGGGATAGAAGAAGAGGAACCGGTGTACGAGACTGCCGGGATGTTGTCGGAGATGTTCAATTTTCCGCATGCGGCTGCGGCGGAATTGATGGAGCAGCAGCCTGTGACGGCCACGTTTAGGGCGGCGAGGCAAGCCGGAGAGTGGTACGGAAACAGACAGCAACAAGGGGTGAATATGATGATGGGTGGATTGGGGGATTCGAAGAACCAAAACGGTGTGAATAACAACCAGCATCAACCACAGCACCAGATTTCAAGCATTAATGCTGACTCAGCAGCTGCCATGCAGCTTTTTCTGATGAACCCTCAAACGAGGTCGCCTTCCCCTCCTCAAAGCCACGCCACTCCTTCTTCAACACTCCACATGTTGCTTCCCAATCCTTCTTCCAATTCCCTCCAAGGTTTCACCGGTTCGGCCGTGGGAGGGTCTTTTGGGCAATTTACATGGGTTCCTGAGAGTGCTCATCAGCAAGGAGGCGTGATGGAAGGGCAAGGTCTTTCGCTATCGTTGTCTTCTTCGCTGGAAGCAGCGAAAGCCGAGGAATTGAGGATGGGGGACAGTGGTTTTCTATATTACAATCATCAACAAGGGGGTGGTGTGGGAGCTGGCGCTTCTTCTTCTTCAACAGTTCAATTTCCGTACAAGAACAACAGTCATCACCAAGCATTGCATTTGCAAGGGGTGATAGGACACGACAACAACCAGCAGGGACATGTTGGGTTCGGGTCATCCTCGTTAGGTGTAGTTAATGTTCTGAGAAACACAAAGTATGTGAAGGCTGCACAAGAGTTGCTCGAAGAGTTTTGCAGTGTTGGGAGGGGTCAGTTTAAGAAGAACAAGTTGAATAGGCAGAATTCAAACCCTAATTCAAATCCCGATGGTGGTGGCGGTGGTTCTTCGCCTTCGTCAAAAGATGCTGGTATTCCTCCTCCTCCTTTGTCAGCCGGTGATAGGATTGAGCATCAGAGAAGGAAGGTCAAACTTCTATCAATGCTGGACGAGGTGGACAGGAGATACAACCATTACTGCGAGCAGATGCAAATGGTGGTGAACTCGTTTGACCTGATGATGGGTTTCGGTGCGGCGGTTCCATACACAGCACTGGCACAGAAAGCAATGTCTCGGCATTTCCGGTGTCTGAAGGACGCAATAACAGCACAGCTGAAGCAAAGTTGCGAGCTACTAGGAGAGAAAGAAGGGGCGGGGACCTCAGGTTTGACCAAGGGTGAGACCCCAAGGCTTAAGGTTCTTGAGCAAAGCCTAAGACAGCAGAGAGCCTTCCACCAGATGGGGATGATGGAACAAGAAGCTTGGAGACCCCAGAGAGGCTTGCCTGAACGATCTGTCAACATTTTGAGAGCTTGGCTTTTCGAACATTTTCTCCATCCGTATCCAAGCGATGCAGATAAGCATCTGTTGGCACGACAGACTGGACTATCGCGAAATCAGGTATCAAACTGGTTCATTAATGCCAGGGTTCGGTTGTGGAAACCCATGGTGGAAGAGATGTACCAACAAGAACTTAAAGAAACAGAGAGTACAGAAGAGAGAGAAAATAACCAAAGCAACAACAGCAATATCAGTGGGAACCAAGCACAAACTCCAAGCACACCAGGAGCAGCTACGACGTCAACAGCAACAACAGCTGCACCACCAACAATCACAACAACAAAACCAACAGGGAAAAAATCCGATATCAATGCCACCGAAAGCGACTCATCACTTGTTGCAATGAATAGACAGGGCTTCTCGGAAAACCAAGGAAAGCAGTCCACCACCACCTCCACCACTGTCATGGCCTCCGTCAGCGCCACCACCTCTGAGATTGCACCACCCGGGTCACAGTGCTTCGACTCAGATCTGCCCCCACAGAGATTAATGGCCACTGATGACACGTGTCGCTTGGTCACAGCAGATTTTGGGACCGCGTCTGCAAGTGCTGACATTGGATCCACACTCATTAGATTTGGGACCACAGTTGGTGACGTGTCACTCACCCTAGGGCTTCGCCATGCCGGGAACATGCCGGAGAAAGCTCCTTTCTCTGTTAGAGACTTTGGAGCCATTTAA 2202 0.5041 MSQDFQPGIFSFPNGLERGRVSPQQQIRRDKVRLQGGFEAAPLVGIEEEEPVYETAGMLSEMFNFPHAAAAELMEQQPVTATFRAARQAGEWYGNRQQQGVNMMMGGLGDSKNQNGVNNNQHQPQHQISSINADSAAAMQLFLMNPQTRSPSPPQSHATPSSTLHMLLPNPSSNSLQGFTGSAVGGSFGQFTWVPESAHQQGGVMEGQGLSLSLSSSLEAAKAEELRMGDSGFLYYNHQQGGGVGAGASSSSTVQFPYKNNSHHQALHLQGVIGHDNNQQGHVGFGSSSLGVVNVLRNTKYVKAAQELLEEFCSVGRGQFKKNKLNRQNSNPNSNPDGGGGGSSPSSKDAGIPPPPLSAGDRIEHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDLMMGFGAAVPYTALAQKAMSRHFRCLKDAITAQLKQSCELLGEKEGAGTSGLTKGETPRLKVLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQQELKETESTEERENNQSNNSNISGNQAQTPSTPGAATTSTATTAAPPTITTTKPTGKKSDINATESDSSLVAMNRQGFSENQGKQSTTTSTTVMASVSATTSEIAPPGSQCFDSDLPPQRLMATDDTCRLVTADFGTASASADIGSTLIRFGTTVGDVSLTLGLRHAGNMPEKAPFSVRDFGAI 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00646 733 MobiDBLite consensus disorder prediction 323 342 - -
Vian10g00646 733 MobiDBLite consensus disorder prediction 550 612 - -
Vian10g00646 733 Gene3D - 485 547 - -
Vian10g00646 733 MobiDBLite consensus disorder prediction 323 364 - -
Vian10g00646 733 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 163 566 - -
Vian10g00646 733 Pfam Homeobox KN domain 499 538 IPR008422 GO:0003677|GO:0006355
Vian10g00646 733 CDD homeodomain 482 543 IPR001356 GO:0003677
Vian10g00646 733 SMART HOX_1 482 546 IPR001356 GO:0003677
Vian10g00646 733 Coils Coil 545 565 - -
Vian10g00646 733 MobiDBLite consensus disorder prediction 562 612 - -
Vian10g00646 733 Pfam Associated with HOX 295 429 IPR006563 -
Vian10g00646 733 SUPERFAMILY Homeodomain-like 484 549 IPR009057 -
Vian10g00646 733 ProSiteProfiles 'Homeobox' domain profile. 479 542 IPR001356 GO:0003677
Vian10g00646 733 FunFam BEL1-like homeodomain protein 4 485 547 - -
Vian10g00646 733 SMART prehox3 290 430 IPR006563 -
Vian10g00646 733 MobiDBLite consensus disorder prediction 108 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00646 Vian-Chr10 6148261 6154512 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00646 290 731 Homeobox Transcription Factor Family AT2G23760 55.622 1.49e-152 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vian10g00646 POX 4.6e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00646 - - gmx:100786231 1059.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00646 10 6148261 6154512 Vian10g00646 10 6148261 6154512 ECH
Vian1g01736 1 20178816 20185642 Vian10g00646 10 6148261 6154512 ECH
Vian10g00646 10 6148261 6154512 Vian1g01736 1 20178816 20185642 PCT