Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00644 ATGGAAGTGCTTTGTTCTGGTGTTCAATATGCTGGGGAATCTGATTGCACTCAGCAGAGTTCGGGAACTGCTTTTGTATATCAAGAAGAAACTAATTGTGCAGAAAGTGGTGGGCAAGACAAACTGGTAGCTGCTCGGCTGAATGAATCATCACATAAAATGCAGGGACCTCAAATAGAAAGGCAAGGTGGTTTGTCAACTAATTCAGATTGCCAATGCAATGGAGCTTCATGTTGTGACTGTCAACTGGATGATCAAAATGAATATTGTGGTTTCCATGATTTTGAAGAAGACATTATGAATGAACCTTGTTTAACATCTGACAACTCTATCTCTGTTGTTGATACAATTGAAAGTGAATCACCAAACAACAGTCGGGAAGGAGACTTGTCATGTTCTGAACCCAAGTGGCTTGAGGGGGATGGATCAGTGGCATTGTGGGTCAAGTGGAGGGGGAAGTGGCAGGCTGGTATCCGGTGTGCAAGGGCTGACTGGCCGTTATCAACGTTGAAAGCAAAACCAACACATGAAAGAAAGAAATACTTTGTTATATTCTTTCCACACACAAGGATTTATTCTTGGGCAGACATGCTGCTCGTTAGATCAATTAATGAGTTTCCCCATCCCATTGCATATAAGACTCATCAGGTGGGACTCAAAATGGTTAAAGACTTAACTGTTGCACGGCGGTTTATTATGCGAAAGCTAGTTGTTGGCATGCTGAACATGGTCGACCAGTTTCCTTTTAATGCTTTGACAGAAACTGCTCGTGATATGAAGGTCTGGAAGGAGTTTGCCATGGAGGCTTCTCGTTGTAATGGTTATTCTGATTTTGGGAGAATGCTTCTAAAGCTGCATAGTAGCATACTGCAGCACCATATAAATGTTGACTGGTTACGGCACTCTTATACCTCTTGGACTGAAAGATGTCAGAGTGCAAATAGTGCTGACTCAGTGGAGCTACTGAAGGAGGAATTGTTTGATTCTATTTTGTGGAATGGGATCAATACTCTCCCTGATGCACCAGTGCAATCATCATTAAGTTCTGAATGGAAAACCTGGAAGCATGATGTAATGAAATGGTTTATGACACCACCTTCCTTATCGATCAGCAAAGACACACAGCAACAGAGTTATGATGATTTGTTCCGAGCAAACCTTCAGGTTTGTAGAAAAAGGGCCAAGCTTGAAGTTCGTCGTGCGGATACACATGCTTCACAAGTGGAAATCAAGGCTCAAACTGTTGCTCTTCAGGCTGACCCTGGCTTCTTTAAGAATCAGGGCATATTGAGCACATTAGCAGATGAGTCTTGCAAACAGGAAGGTGTTAGGGAGATGTCTGTGGCAGCTGATTCACCTGGTCATTTGGTCGATAAATGGAATGGAATTGTAGTTGAGAATACTGATTCCCATTTTTTGCATACCAAAGAATTAACACCTTCAAAGGAAACGATTGTTGCGAAATCTGTAGAATTTGGTAGTAAGAATCGACAATGTATAGCTTATATTGAAGCAAAGGGAAGACAGTGTGTGAGATGGGCAAATGACGGTGATGTGTACTGTTGTGTACATTTATCTTCACGATTTTTGGGGAGCTCAACGAAATCTGAAAAACCTGTTCCACTTGATACTCCTATGTGTGAAGGTACTACTGTTCTGGGTACTAGATGTAAGCATCGTGCCCTACCTGGCTCTTTATTCTGTAAGAAACACCGGCTACATGCTGAAACAGAGCAGATCTCAAATATACCGCAGAATACACTAAAGAGAAAACATGAAGAAAATTATACTGGTTCAGAGGGCATTCTCTCGAGAGAATTGGTATTAGTCAATGTTGAAAGTCCACTGCAAATGGATCCAGTGTCATCCATTGGTGGTGATTCCCTACATGGAGAAAACAACTCTAATGAGAAGCCCATGCATTCTGAACATGATCATAATGCAATGGAGTCACTGCAGTGTATAGGTTCCCCTCCCTATGATAAGATGAATCCTTGCAGGGAAGGTCCTAAACGGTATTGCTTGTATTGCGAAAGTCACCTCCCTAGTTGGCTTAAGCGTGCAAGAAATGGGAAGAGTAGAATAGTATCAAAAGAAGTGTTCACAGAACTTTTGAGGGACTGCAACTCATGGGAGCAAAAGGTACATCTGCATAAAGCATGTGAACTTTTTTACAGGCTTCTTAAAAGCATTTTGTCATTAAGAAACCCTGTTCCTAAGGATGTCCAATTTCAGTGGGCTCTGACTGAAGCTTCTAAAGATTCTAGTGTAGGAGAGTTTTTTAAAAAATTAGTTCACAGTGAAAAGGCCAGAATCAAATCATTATGGGGATTCAATGATGACATGGATATATCTTCTGTTATGGAAGAACCTCCTCTCTTGCCATCCACAAACGATGATTACTATGATAAGGAAAATGCCATTAAGTGTAAGCTATGCTCTGCAGAATTTCCTGATGACCAAGAGCTTGGTAACCATTGGATGGACAGTCATAAAAAGGAGGCGCAGTGGCTATTTAGAGGCTATGCATGTGCAATTTGTCTGGATTCATTTACTAACAAGAAACTGTTGGAAACACATGTTCAAGAGAGACACCATGTGCAATTTGTTGAACAATGCATGCTTCTCCAATGCATCCCTTGTGGGAGTCATTTTGGAAATACGGAACAATTATGGCAGCATGTTTTATCAGTTCATCCTGTTGATTTTAAACCATCAAAAGCTCCTGAGCAGCAAACTTTATCTACTGGTGAAGATTCTCCAGTAAAACGTGATCAGGGTAATTCAGCCCCTTTGGAGAATAATTCTGAGAATACAGGTGGTTTTCGGAAATTTGTTTGCAGGTTTTGCGGGTTGAAATTTGATTTACTACCTGACCTAGGTCGACATCACCAAGCTGCCCATATGGGGCCTAATCTGGCCAGCAGTCGCCCTGCAAAGAGAGGAGTTCGATATTATGCTTACAGATTAAAATCTGGCAGACTTAGCCGCCCCAGATTTAAAAAAAGTTTGGCAGCAGCATCATACAGGCTTAGAAATAAGGCTAATGCTAATTTAAAGCGAAGCATTCAGGAAACAAATTCACATGGCACAGGGGGAATAATAGTACAACCTCATGTTACTGAAACAACAAACATTGGTAGATTGGCTGAACATCAATGCTCAGCTGTTTCAAAGATTTTGTTTTCAGAGATTCAGAAGACGAAACCTCGTCCAAACCATTTTGATATTTTATCAATTGCTCGCTCTGCTTGCTGCAAAGTTAGTCTTGTAGCGTCATTGGAGGAGAAATATGGAATTCTTCCTGAAAAGCTCTATTTGAAGGCAGCAAAACTTTGCAGTGAGCATAATATTTTGGTAAGTTGGCATCAGGACGGTTTTATTTGTCCTAGTGGTTGTAATGTATCAAAGGCTCAAGTTTTGCTCTCTCCTTTAGAGTCTCTTCCTAATAGTTCTGTAATGTCCAAAGCTGGGAATTCATCTGATCCTACAAGTGACGAGTGGGAGGTGGATGAATTTCACTGCATCATCAATTCACGAACTTTAAAGTTAGGTTCACTGCAAAAAGCTGTGGTCTTGTGTGATGACATTAGCTTTGGGAAGGAATCAATTCCAGTGATTTGTGTGGTAGATCAAGAACTTGTGCATTCTCTTCCTATCAATGGCTGTAATGGACAAAATATAAACCCTTCTAGGCCTTGGGAGAGCTTTACCTATGTTACAAAGCCAATGCTCGATCAATCCCTCATTCTTGATTCAGAGAGTCTGCAACTGGGATGTGCCTGTCCATACACCACCTGCTGTCCTGAAACATGTGATCATGTTTACCTTTTTGGCAATGACTATGATGATGCAAAAGACATATTTGGGAAACCAATGCGTGGCAGGTTCCCATATGATGAGAATGGTCGAATAATCCTGGAGGAAGGTTATCTTGTCTACGAGTGTAATCACATGTGCAGATGCAATAAATCCTGTCCAAATAGAGTATTGCAGAATGGTGTACGAGTCAAATTGGAAGTCTTTAAAACAGAGAAAAAGGGATGGGCAGTAAGGGCTGGTGAAGCTATTCTACGTGGCACATTTGTGTGTGAATACATTGGAGAAGTTTTAGATGTGAAAGAGGCACATGATAGGCGTAGAAGTTATGGCACAGAGCATTGCAGTTATTTCTACGACATTGATGCTCGTGTTAATGATATGAGCAGATTGATTGAAGGAGAGGCTCAGTATGTAATTGATGCCACTAAATTTGGAAATGTTTCAAGATTCATCAATCATAGTTGCACCCCAAATCTGGTCAATCACCAAGTTCTTGTAGAGAGCATGGATTCTGAACGTGCACATATCGGTTTTTATGCAAATCGGGATATTGCTTTAGGTGAAGAGCTAACATATGACTATCAGTACGAGCATGTGCTTAGTGAAGGATCTCCTTGTCTTTGCGAATCCTTGAAGTGTAGGGGGCGCCTTTATTAG 4479 0.4115 MEVLCSGVQYAGESDCTQQSSGTAFVYQEETNCAESGGQDKLVAARLNESSHKMQGPQIERQGGLSTNSDCQCNGASCCDCQLDDQNEYCGFHDFEEDIMNEPCLTSDNSISVVDTIESESPNNSREGDLSCSEPKWLEGDGSVALWVKWRGKWQAGIRCARADWPLSTLKAKPTHERKKYFVIFFPHTRIYSWADMLLVRSINEFPHPIAYKTHQVGLKMVKDLTVARRFIMRKLVVGMLNMVDQFPFNALTETARDMKVWKEFAMEASRCNGYSDFGRMLLKLHSSILQHHINVDWLRHSYTSWTERCQSANSADSVELLKEELFDSILWNGINTLPDAPVQSSLSSEWKTWKHDVMKWFMTPPSLSISKDTQQQSYDDLFRANLQVCRKRAKLEVRRADTHASQVEIKAQTVALQADPGFFKNQGILSTLADESCKQEGVREMSVAADSPGHLVDKWNGIVVENTDSHFLHTKELTPSKETIVAKSVEFGSKNRQCIAYIEAKGRQCVRWANDGDVYCCVHLSSRFLGSSTKSEKPVPLDTPMCEGTTVLGTRCKHRALPGSLFCKKHRLHAETEQISNIPQNTLKRKHEENYTGSEGILSRELVLVNVESPLQMDPVSSIGGDSLHGENNSNEKPMHSEHDHNAMESLQCIGSPPYDKMNPCREGPKRYCLYCESHLPSWLKRARNGKSRIVSKEVFTELLRDCNSWEQKVHLHKACELFYRLLKSILSLRNPVPKDVQFQWALTEASKDSSVGEFFKKLVHSEKARIKSLWGFNDDMDISSVMEEPPLLPSTNDDYYDKENAIKCKLCSAEFPDDQELGNHWMDSHKKEAQWLFRGYACAICLDSFTNKKLLETHVQERHHVQFVEQCMLLQCIPCGSHFGNTEQLWQHVLSVHPVDFKPSKAPEQQTLSTGEDSPVKRDQGNSAPLENNSENTGGFRKFVCRFCGLKFDLLPDLGRHHQAAHMGPNLASSRPAKRGVRYYAYRLKSGRLSRPRFKKSLAAASYRLRNKANANLKRSIQETNSHGTGGIIVQPHVTETTNIGRLAEHQCSAVSKILFSEIQKTKPRPNHFDILSIARSACCKVSLVASLEEKYGILPEKLYLKAAKLCSEHNILVSWHQDGFICPSGCNVSKAQVLLSPLESLPNSSVMSKAGNSSDPTSDEWEVDEFHCIINSRTLKLGSLQKAVVLCDDISFGKESIPVICVVDQELVHSLPINGCNGQNINPSRPWESFTYVTKPMLDQSLILDSESLQLGCACPYTTCCPETCDHVYLFGNDYDDAKDIFGKPMRGRFPYDENGRIILEEGYLVYECNHMCRCNKSCPNRVLQNGVRVKLEVFKTEKKGWAVRAGEAILRGTFVCEYIGEVLDVKEAHDRRRSYGTEHCSYFYDIDARVNDMSRLIEGEAQYVIDATKFGNVSRFINHSCTPNLVNHQVLVESMDSERAHIGFYANRDIALGEELTYDYQYEHVLSEGSPCLCESLKCRGRLY 1492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00644 1492 ProSiteProfiles SET domain profile. 1337 1469 IPR001214 GO:0005515
Vian10g00644 1492 SMART preset_2 1194 1321 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vian10g00644 1492 Gene3D Classic Zinc Finger 795 868 - -
Vian10g00644 1492 Gene3D SET domain 1176 1476 IPR046341 -
Vian10g00644 1492 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 5 1492 - -
Vian10g00644 1492 SMART set_7 1337 1475 IPR001214 GO:0005515
Vian10g00644 1492 MobiDBLite consensus disorder prediction 908 936 - -
Vian10g00644 1492 Pfam Pre-SET motif 1198 1329 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vian10g00644 1492 SMART c2h2final6 945 968 IPR013087 -
Vian10g00644 1492 SMART c2h2final6 876 899 IPR013087 -
Vian10g00644 1492 SMART c2h2final6 808 831 IPR013087 -
Vian10g00644 1492 SMART c2h2final6 842 865 IPR013087 -
Vian10g00644 1492 Pfam Zinc finger C2H2-type, 3 repeats 844 969 IPR040689 -
Vian10g00644 1492 SUPERFAMILY SET domain 1186 1482 IPR046341 -
Vian10g00644 1492 ProSitePatterns Zinc finger C2H2 type domain signature. 947 968 IPR013087 -
Vian10g00644 1492 ProSiteProfiles Zinc finger C2H2 type domain profile. 945 973 IPR013087 -
Vian10g00644 1492 ProSiteProfiles Post-SET domain profile. 1476 1492 IPR003616 -
Vian10g00644 1492 MobiDBLite consensus disorder prediction 906 936 - -
Vian10g00644 1492 ProSitePatterns Zinc finger C2H2 type domain signature. 878 899 IPR013087 -
Vian10g00644 1492 ProSiteProfiles Zinc finger C2H2 type domain profile. 842 865 IPR013087 -
Vian10g00644 1492 Pfam SET domain 1348 1468 IPR001214 GO:0005515
Vian10g00644 1492 ProSiteProfiles Pre-SET domain profile. 1258 1334 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vian10g00644 1492 ProSitePatterns Zinc finger C2H2 type domain signature. 810 831 IPR013087 -
Vian10g00644 1492 MobiDBLite consensus disorder prediction 622 644 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00644 Vian-Chr10 6122032 6131948 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00644 99 1491 C2H2 Transcription Factor Family AT2G23740 51.195 0.0 1385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian10g00644 Pre-SET 1.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00644 - - gmx:100786757 2671.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00644 10 6122032 6131948 Vian10g00644 10 6122032 6131948 ECH