Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00634 ATGTTTGTTCACCACCGTACGAATCTCGTTATAGTCCTCACGATCTTGATAGTGTGCACAACAAGAGCGCAAAACCTCACCTGTAATAGGCAATGCGGGAAGCAGAGTGTTCAGTTCCCTTTTGGATTCTCCGAAGGTTGTGAAATCATACTAAACTGTTCCGACAACAAAGTTCATCTTCACGAATTTCTGGTCCAAAACATTACCAACAGCAACATACTCGTCAATCTCCCTGCAAAATGCAACCGCAGCATGGAATCCATCGAGCCACTTTTCAGTAACAATTTTGCTCCCTCTGTTAACAACAGCTTTCTGGTGCAAGATTGCAGCGATGCGTCTCGAGGGTGCGCTTTTCCGGCTTCGAATTTTGTGGAAACCTGCGATAAGACAAGTGGTAATATCAGTTGCTTTTCGAAACAAGATGAGGCGGGTGTTCTGACGTACAAAGATTTGAAAGAAACTAAGTGTAATTACTTGTTCTCTGCGATTTATTTTGGGCAGAGCAAGGAGATTACGCTGCAGTTTCAGGTGGTCGAGTTGGCGTGGTGGCTTCAAGGACAGTGTGATGAATGTTCTGAAAACGCTACCTGCTCAACGGTCCAAAGAGGGTTTCGGTGCCAGTGTATCCATGGTTTCACCGGCGACGGCTTCATAAATGGCACCGGTTGCCGGAAAACTTCGGCTTCAAGTTGCAGTGCTTCAACACTGGCTTCCGGAGGATGTGGAAAAGCAACCAAAATCGGTGTTGCTGTTGGAGCGAGCATAGCTGGAGCTTTGGTGGTGGCTGGTCTATTTCTTCTATGCTACTGTGCTAGGCGCCGCTCTATTTGGTTGGGAAAACATACCAGAGTAAAGCGGCAATTACGTGAAGCTGCAGGAAACTCAAGTATACCTTTCTATCCCTACAAAGAAGTAGAAAAAGCCACAAATTCTTTCTCTGAGAAACACAGGCTGGGAACCGGGGCATTTGGTACAGTTTACGCCGGAAAACTGCACAGTGATGAATGGGTTGCTATCAAGAAGTTAAGGCAAAGAGACACCAACAGTGCTGACCAAGTCATGAATGAGATCAAGCTCCTTTCTTCAGTGAGTCATCCAAATTTAGTTCGGCTCTTAGGTTGCTGCATAGAGAAGGGAGAGCAGATCCTTGTTTATGAATATATGCAAAATGGAACACTTTCTCAGCACTTGCAAAGAGAGAGGAGTGAAGGACTGCCGTGGACAGTAAGACTTACCGTAGCTACTGAAACTGCTAATGCTATAGCATATCTCCATTCCGCAATTCACCCCCCAATTTACCACAGAGACATAAAATCTAGTAATATACTTTTGGATTATCACTTCAAATCTAAGATAGCTGATTTTGGGCTTTCTAGGCTTGGCATGACAGAAACATCTCATATCTCAACCGCTCCACAGGGGACTCCTGGTTATGTGGATCCCCAATACCACCAGAACTTCCATCTTTCTGATAAAAGTGATGTGTACAGTTTTGGAGTGGTCTTGGTAGAGATAATAACTGCCATGAAAGCGGTTGATTTTTCTCGACCTAGGAGTGAGGTTAACTTAGCTGCACTTGCCGTAGATAGGATTAGGAGGGGTGCTGTAGATGAGATCATAGACCCCTTCCTTGAACCACACAGAGATGCTTGGACACTGTATTCTATTCATAAGGTAGCTGAGCTTGCATTTAGGTGCCTTGCTTTTCACAGTGACATGAGGCCTACTATGATGGAAGTGGCAGAGGAGCTAGAACACATTAAACGCAGTGGATGGGCAACTATGGAGGAAACTGCCATGACTTCATCGAATGGATCCACTTGTTCATCACCTCGCAGTGGAAGTGAGAAGTCATTGAGTGGTATCAAAAAGGCTGGCCAAGGGAGTGCGAGATTGATAGTTCCCCAGAAGATTGAGAGATTTTTTCATTCTGTGGAGGTGAAAGACAGCTCTCCTGTATCAGTACATGATCCTATTCATTGGTCGAGTGGACACAGCTCACTTTCGTCAAACAGCTTGTTAGTAAATGTCATCCCTTGA 2040 0.4505 MFVHHRTNLVIVLTILIVCTTRAQNLTCNRQCGKQSVQFPFGFSEGCEIILNCSDNKVHLHEFLVQNITNSNILVNLPAKCNRSMESIEPLFSNNFAPSVNNSFLVQDCSDASRGCAFPASNFVETCDKTSGNISCFSKQDEAGVLTYKDLKETKCNYLFSAIYFGQSKEITLQFQVVELAWWLQGQCDECSENATCSTVQRGFRCQCIHGFTGDGFINGTGCRKTSASSCSASTLASGGCGKATKIGVAVGASIAGALVVAGLFLLCYCARRRSIWLGKHTRVKRQLREAAGNSSIPFYPYKEVEKATNSFSEKHRLGTGAFGTVYAGKLHSDEWVAIKKLRQRDTNSADQVMNEIKLLSSVSHPNLVRLLGCCIEKGEQILVYEYMQNGTLSQHLQRERSEGLPWTVRLTVATETANAIAYLHSAIHPPIYHRDIKSSNILLDYHFKSKIADFGLSRLGMTETSHISTAPQGTPGYVDPQYHQNFHLSDKSDVYSFGVVLVEIITAMKAVDFSRPRSEVNLAALAVDRIRRGAVDEIIDPFLEPHRDAWTLYSIHKVAELAFRCLAFHSDMRPTMMEVAEELEHIKRSGWATMEETAMTSSNGSTCSSPRSGSEKSLSGIKKAGQGSARLIVPQKIERFFHSVEVKDSSPVSVHDPIHWSSGHSSLSSNSLLVNVIP 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00634 679 SUPERFAMILY Protein kinase-like (PK-like) 292 585 IPR011009 -
Vian10g00634 679 FunFam Wall-associated receptor kinase-like 20 388 597 - -
Vian10g00634 679 FunFam Wall-associated receptor kinase-like 14 280 387 - -
Vian10g00634 679 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 11 623 IPR044652 GO:0004672
Vian10g00634 679 Gene3D Transferase(Phosphotransferase) domain 1 388 607 - -
Vian10g00634 679 Pfam Protein tyrosine and serine/threonine kinase 315 584 IPR001245 GO:0004672|GO:0006468
Vian10g00634 679 ProSiteProfiles Protein kinase domain profile. 312 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g00634 679 SMART serkin_6 312 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g00634 679 ProSitePatterns Serine/Threonine protein kinases active-site signature. 432 444 IPR008271 GO:0004672|GO:0006468
Vian10g00634 679 ProSitePatterns Protein kinases ATP-binding region signature. 318 341 IPR017441 GO:0005524
Vian10g00634 679 CDD EGF 191 216 - -
Vian10g00634 679 Gene3D Phosphorylase Kinase; domain 1 283 387 - -
Vian10g00634 679 Gene3D Laminin 181 224 - -
Vian10g00634 679 MobiDBLite consensus disorder prediction 601 621 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00634 Vian-Chr10 6043181 6047036 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00634 1 677 Receptor kinase-like Gene Family AT2G23450 55.099 0.0 732
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vian10g00634 PK_Tyr_Ser-Thr 1.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00634 - - vum:124829194 1244.18