Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00619 ATGATCCAAGAACTCTTGGGTGCTGCTACTGCTAGCCTTATAGCAGGAGAAACAAAAATCTCCATTAATAATAATGGAGGAGGAGGAGGACGACTTCTACTAACACCACCCGCACCGTCTTCTCCTTCTCCGTCTCCTTCTTGCACAACAACCATCACCACTTCCACTAACACCGCCACTTCTTCCAACTCAGACAACCAAAATTTGAGGTGCCCTCGTTGTGATTCATCAAACACTAAGTTTTGTTACTACAACAACTACAACCTCACTCAGCCTCGCCACTTCTGCAAGACATGTCGCCGCTACTGGACCAAAGGTGGCGCTCTCAGGAATGTTCCCATCGGAGGTGGCTGCCGGAAAAGCAAGACCTCCGGCATGTCCAACTCGGTGGGAAAGCAGGCCGCCACAACAAAGATGAAAGCAGTGGCATCGGAGCTTGGAAGGCCACAGGGACTCTTTGACCAAGAGCTTCCACAAACCTCAATCCTTTGGGGCTCACCGCAAAATACTCAACTCATGGCTTTACTAAGAGCTACCCAAAGCCAAAGCCAAAGCCAAAACCAAAACCAAAACTCAAACCCTAACCCTAACCCTAGTCTCGTGTCAATGGCCGTCAAGAGAGAAGGGAACTTATCGGAATCTCACTCGCACATGGTCACTGAGTCATTTCTCCCAAATGGGTTGCTGAATAGTACTAGAACTGGTCTAGGATACGATGGTGTGGGAGAACTTCCTTCACTGGGTCTATGCAGCTCCTTTTGGAGGAATAATCAAAATCAGAATCAGCAGCAAAGCAACGGTTTTGTACTTGGAGAACAGCAAAGTGTTGGAGTTCAAGAACTTTACCACAAGTTCAGGTCATCATCGTCAGTTCATTATTGTGGTAGTGATAATTCACCGGTGTTTCTCGGCAACATGCCTTCATCATCTTCTTTGTCCAACATTTTGGAATCATCTTCAGTTTCTGGCAGCGAATTCGGGTGCTGGAATCCAACCCTTTCCTGGGGTGATCTTCCCACAACAAGTGGAGCATATCCTTAA 1041 0.4736 MIQELLGAATASLIAGETKISINNNGGGGGRLLLTPPAPSSPSPSPSCTTTITTSTNTATSSNSDNQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKSKTSGMSNSVGKQAATTKMKAVASELGRPQGLFDQELPQTSILWGSPQNTQLMALLRATQSQSQSQNQNQNSNPNPNPSLVSMAVKREGNLSESHSHMVTESFLPNGLLNSTRTGLGYDGVGELPSLGLCSSFWRNNQNQNQQQSNGFVLGEQQSVGVQELYHKFRSSSSVHYCGSDNSPVFLGNMPSSSSLSNILESSSVSGSEFGCWNPTLSWGDLPTTSGAYP 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00619 346 MobiDBLite consensus disorder prediction 27 69 - -
Vian10g00619 346 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 60 257 IPR045174 GO:0003700|GO:0006355
Vian10g00619 346 Pfam Dof domain, zinc finger 67 123 IPR003851 GO:0003677|GO:0006355
Vian10g00619 346 ProSiteProfiles Zinc finger Dof-type profile. 69 123 IPR003851 GO:0003677|GO:0006355
Vian10g00619 346 ProSitePatterns Zinc finger Dof-type signature. 71 107 IPR003851 GO:0003677|GO:0006355
Vian10g00619 346 MobiDBLite consensus disorder prediction 45 69 - -
Vian10g00619 346 MobiDBLite consensus disorder prediction 178 200 - -
Vian10g00619 346 MobiDBLite consensus disorder prediction 178 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00619 Vian-Chr10 5929300 5930340 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00619 37 129 C2C2-Dof Transcription Factor Family AT5G65590 64.211 2.92e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vian10g00619 zf-Dof 2.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00619 - - gmx:100800420 465.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00619 10 5929300 5930340 Vian10g00619 10 5929300 5930340 ECH
Vian10g00619 10 5929300 5930340 Vian1g01706 1 19690049 19691077 PCT