Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00617 ATGTCTGCAGAAGCAAAACAAGAAACAAAACCTTTGACCAACCCCTCTTACTCCTCAGATGTTGACGATGGTGTAGTGAAGGATGTAGTTCTGTGGAGAAGAAAGAAACTAAATGCAATCGTTATTGTAGTGGCAACAGCAGCATGGGTGTTGATGGAAGTATTTGAGTTCAACTTCCTCACTGTCATCTCATGGGTTGCCATACTCGTTGTTGCTTCAACATTCCTTTATGCCAATATGCTTAGACTTTTGGGCAAGGAACGACCAAACTTGTTGAGGTTGGAGTTGAGTGAAGAAACAACTAGAAGAATAGCAAACGAAGTTCGAGCATGGTTTGAAAAGATAATAAGGTGGTTGGTCCTTGTGAGTGTAAGGAAAGAGTGGCCAGTATTTCTGGGGGTTGTGGCTGGATTCTTGTCACTGTCTTATTTGGGAAGCTGCATGGACCTGCTTACAGTAGTTTATATCGGTGTATTAGTGGGAATGGCAATTCCATTAACTTATGTGAAGAACGAGGACAAGATCAAGAGATTTGGGGAGTGGTTAAAGGAGAAATACAAGAGATGTTATGAGATTATTGATGAGAAGACCATTCATAAGATTAAAAGCAGAATATCCAAGGAGAAGAAGACAGAGGAGCAAGTTTGGATTTTTGTCATCTGGGTGTTGTTAATTATGGCAGATCTGGTCAGTGGAGCTGCTGTGGGAGAGGCACTGAAATTGGCTATTTCAACCATAAAAAAGGGTCTAGACTTCGAATCAACACTCGAGAGCAACATAGAAACCTTAAACTCTTTGAATCCTCTGGTGGAGAAGATGAAGACGTACAACACGATGTTGGATTCGCCCAGCAAGGAGATAGAGAAGTTGGAGAGTCTCGTGCGAAATAGTCAAGAGCTGGTTCGGAAGTGCTCGAAATTGGGTCGGTGGAAAATGTTGTCGTTCCCTCATTACCAGAGCAAGCTTCGGAGCAAAGACGGGGCTCTCCAGACGCACTTATCGATGAACATGACGGCGCAGAACACGGTGAACTTGTTGAAGGTGATGGTCGACATGAGGAAGGTTCTGGAGATTCTGCTAAAAGAGGGATTCGGGCGTTATCCTGAGTATCAGTTCATGGATATCTGTGGGGCTCCTCAAGAACCTGAATGTTTGGGAATGGATGTGCCTTTAAGGAAGCTGAGGATTGAGTTGCTCAAGGGTGGTGTGTCTGTTCTTGTCTTGACTGGTTTGGGAGGATCGGGGAAAAGCACACTGGCTAAGAAGATATGTTGGTACCCTCAATTCGGGAAAAACATCTTCTTTGTCACTGTATCAAAAACTCCCGACTTGAAGACCATTGTGGAGACACTGTTTGAACACTGCGGTTTTAAGGTTCCGAAGTTTCAAACCGATGAAGATGCAGTAAATCGACTGGAAGTTCTGCTGAGGCTTCTTGGGCAACATCCAATATTGTTGGTCTTGGATGATGTTTGGCCTGGCTCAGAAGACCTTGTTGAGAAGTTTAAAATTCAGATACCTGATTACAAGATTTTGGTTACTTCAAGGGTTTCATTTCCAAGATTTGGCACCTCATACCAGTTGGATAAACTTGATGATGTCCATGCAGAATCCCTTTTCCGTCACTTTGCACAGCTGAAAGACAAAAGCTCATACATACCTGAAAAAAATCTTGTCGACGAGATAGTGAAAGGTTGCAAGGGTTCACCATTGGCCCTTAAGGTGATTGCTGGATCGCTCTGTAACAAGTCTTTTGAGGTGTGGCGAGATATGATGGAGCATTTACAAAAGCAATCCATTCTGGAGTCTGATACTGATTTGCGTTTTCGTCTTCAACAAAGTTTAGATATATTGGAGACTAAGTTCTCCGTCAATGAAAAGGAGTTTTTCATGGATCTGGGGCTATTTCCTGAAGATCAAAGAATCCCTGTAGCCGCCCTCATTGATATGTGGGCAGAACTGTATAACCTTAATGAAGATGGTAGCAATGCAATGTCCATTATCCATGATTTAACCACCAGGAATTTGATTAATGTTATAGTTACAAGGAAAGTTGCAAAGGATACAGACATGTACTACAATAACCATTTTGTTTTGGTGCATGATCTCCTTAGAGAGCTAGCAATACATCTGAGCAAAGGGGAAAAAACATTTGAACAGAGAGAAAGAGTGATGATTGAGTTAAAGGGAGATAATCGTCCTGAATGGTGGGTAGGACTGAATCCGCTAGGAATCATTGGCCGTTCCTTCTCATACATCCTGGGAATGTTTCATAGACAGAAACAACCAAAGGTTGCTGCTCGCATATTGTCTATTTCAACTGATGAAACGTTTAATTCGGATTGGTGTGACATGCAACCAGACGAAGCTGAGGTTCTGGTTTTAAATCTTCTTTCTAGCCAGTACTCGTTGCCAGAGTTCACAGAGAAGATGCATAAACTGAAAGTTCTGATTGTCACAAATTATGGTTTCCATCGTTCTGAACTAAACATGTTTGAGCGACTTGGTTCTTTAACTAATTTGAAAAGAATCAGATTGGAAAAGGTTTCAATCCCTCCCCTGTGCATATTGAAGAATCTACGAAAATTGTCCATTCATATGTGTAATACACGGCAGGCTTTTGAAAGATATTCTATCTCGGATGCAATGCCAAATCTCGTGGAGATGAGCATTGATTATTGCAAAGATCTGATTAAATTGCCTGATGGGCTGTGTAACATCACCCCATTGAAAAAGCTTAGTATCACTAACTGTCACGGGCTTTCTGCACTGCCACAAGATCTTGCAAAGCTGGAGAATTTGGAAGTTCTAAGGCTATGTTCCTGCTCTGATTTGGCAGATATGCCAGATTCTGTTAAAGAGCTTAACAAACTTAGCTGTCTCGATATCTCAGACTGTTTAAGTCTTACCAAATTACCAGATGACATTGGTGAGTTGAAGCTTCAGAAGCTCTACTTGAAGGGTTGCTCAAAACTGAGAGAACTGCCAGACTCGGTCGATAAGTTTGAAAATTTAGAGCATGAAATACACGTGATCTGTGATGAAGAAATGGCTTCCCTATGGAAAAATTCTACCATTCGCAAATTGAAGATAGAGATACCTACAGTGGAGGTTAACTTAAATTGGCTTCCTGGAGTTCATTCTTGA 3147 0.4172 MSAEAKQETKPLTNPSYSSDVDDGVVKDVVLWRRKKLNAIVIVVATAAWVLMEVFEFNFLTVISWVAILVVASTFLYANMLRLLGKERPNLLRLELSEETTRRIANEVRAWFEKIIRWLVLVSVRKEWPVFLGVVAGFLSLSYLGSCMDLLTVVYIGVLVGMAIPLTYVKNEDKIKRFGEWLKEKYKRCYEIIDEKTIHKIKSRISKEKKTEEQVWIFVIWVLLIMADLVSGAAVGEALKLAISTIKKGLDFESTLESNIETLNSLNPLVEKMKTYNTMLDSPSKEIEKLESLVRNSQELVRKCSKLGRWKMLSFPHYQSKLRSKDGALQTHLSMNMTAQNTVNLLKVMVDMRKVLEILLKEGFGRYPEYQFMDICGAPQEPECLGMDVPLRKLRIELLKGGVSVLVLTGLGGSGKSTLAKKICWYPQFGKNIFFVTVSKTPDLKTIVETLFEHCGFKVPKFQTDEDAVNRLEVLLRLLGQHPILLVLDDVWPGSEDLVEKFKIQIPDYKILVTSRVSFPRFGTSYQLDKLDDVHAESLFRHFAQLKDKSSYIPEKNLVDEIVKGCKGSPLALKVIAGSLCNKSFEVWRDMMEHLQKQSILESDTDLRFRLQQSLDILETKFSVNEKEFFMDLGLFPEDQRIPVAALIDMWAELYNLNEDGSNAMSIIHDLTTRNLINVIVTRKVAKDTDMYYNNHFVLVHDLLRELAIHLSKGEKTFEQRERVMIELKGDNRPEWWVGLNPLGIIGRSFSYILGMFHRQKQPKVAARILSISTDETFNSDWCDMQPDEAEVLVLNLLSSQYSLPEFTEKMHKLKVLIVTNYGFHRSELNMFERLGSLTNLKRIRLEKVSIPPLCILKNLRKLSIHMCNTRQAFERYSISDAMPNLVEMSIDYCKDLIKLPDGLCNITPLKKLSITNCHGLSALPQDLAKLENLEVLRLCSCSDLADMPDSVKELNKLSCLDISDCLSLTKLPDDIGELKLQKLYLKGCSKLRELPDSVDKFENLEHEIHVICDEEMASLWKNSTIRKLKIEIPTVEVNLNWLPGVHS 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00617 1048 SUPERFAMILY L domain-like 791 1006 - -
Vian10g00617 1048 Gene3D - 376 519 IPR027417 -
Vian10g00617 1048 Gene3D - 530 611 IPR042197 -
Vian10g00617 1048 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 381 633 IPR027417 -
Vian10g00617 1048 ProSiteProfiles Reticulon domain profile. 26 213 IPR003388 -
Vian10g00617 1048 Pfam Reticulon 26 179 IPR003388 -
Vian10g00617 1048 Gene3D - 612 709 IPR036388 -
Vian10g00617 1048 PRINTS Disease resistance protein signature 566 580 - -
Vian10g00617 1048 PRINTS Disease resistance protein signature 953 969 - -
Vian10g00617 1048 PRINTS Disease resistance protein signature 478 492 - -
Vian10g00617 1048 PRINTS Disease resistance protein signature 405 420 - -
Vian10g00617 1048 Pfam Arabidopsis broad-spectrum mildew resistance protein RPW8 227 355 IPR008808 -
Vian10g00617 1048 Pfam NB-ARC domain 393 601 IPR002182 GO:0043531
Vian10g00617 1048 PANTHER PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8 226 1043 IPR039203 GO:0050832
Vian10g00617 1048 Gene3D Ribonuclease Inhibitor 759 1021 IPR032675 -
Vian10g00617 1048 ProSiteProfiles RPW8 domain profile. 224 371 IPR008808 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00617 Vian-Chr10 5908821 5914510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00617 410 992 WRKY Transcription Factor Family AT5G45050 22.946 7.68e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00617 - - gmx:100792590 1191.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00617 10 5908821 5914510 Vian1g01700 1 19619785 19621871 PCT