Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00616 ATGGATCGGCCGGCGACCGGAATTGGATTGGACACGCCGATCATGCACGATAGCGACCGTTACGATTTCGTTCGCGATATTGGGTCTGGGAATTTCGGCGTTGCTAGACTTATGAGGGACAAGCAAACGCAAGAGCTTGTTGCCGTCAAGTATATAGAACGCGGAGAAAAGATTGATCAAAATGTTAAAAGAGAAATAATTAATCACAGGTCTCTAAGGCATCCTAACATTATTGGGTTTAAGGAGGTCATTTTAACACCTACCCATCTTGCCATTGTAATGGAATTTGCATCTGGAGGAGAATTATTTGCCCGAATCTGCAATGCAGGGCGTTTTACTGAGGATGAGGCTCGTTTCTTCTTTCAACAACTCATATCTGGTGTCAGCCACTGTCATGCAATGGAAGTGTGTCACCGGGACTTGAAGTTGGAAAACACTTTGTTGGATGGAAGCCCAGCACTCCATTTGAAGATATGTGATTTTGGATATTCCAAGTCTTCAATGCTTCATTCACAACCTAACTCAACCGTGGGAACCCCAGCATATATTGCTCCAGAAGTATTGCTGAAGAAAGAGTATGATGGCAAGATTGCGGATGTATGGTCATGTGGAGTAACCTTATATGTGATGCTAGTGGGATCATATCCTTTTGAAGATCCTACAGATCCAAGGAATTCCTGGAAGACAATTCAGAGGGTTCTTGGTGTCCAGTATTCTATTCCAGATGATACACAAATATCTCCAGAATGTGGCCACCTTATCTCAAGGATATTTGTTTTTGACCCTGCAGAGAGAATCACTATTCCTGAAATATTGAAAAATGAATGGTTTCTGAAAAATCTCCCTCCTTACTTGACGGATGAAAATATCATGGGTAAGCAATTTGTAGAGTCAGATCAGCCTATGCAGAGCATTGATACAATTATGCAGATAATTTCAGAAGCTACCGTACCAGCCGCAGGGACCTATTCTTTAGACCAGTTTTTGACTGATGATATAATAGATGATGACACGGACGAATCAGACTCTGACTTCGAGCAATATGTAGATAGCAGTGGGGAGATAGTGTATGCCATGTAA 1080 0.4213 MDRPATGIGLDTPIMHDSDRYDFVRDIGSGNFGVARLMRDKQTQELVAVKYIERGEKIDQNVKREIINHRSLRHPNIIGFKEVILTPTHLAIVMEFASGGELFARICNAGRFTEDEARFFFQQLISGVSHCHAMEVCHRDLKLENTLLDGSPALHLKICDFGYSKSSMLHSQPNSTVGTPAYIAPEVLLKKEYDGKIADVWSCGVTLYVMLVGSYPFEDPTDPRNSWKTIQRVLGVQYSIPDDTQISPECGHLISRIFVFDPAERITIPEILKNEWFLKNLPPYLTDENIMGKQFVESDQPMQSIDTIMQIISEATVPAAGTYSLDQFLTDDIIDDDTDESDSDFEQYVDSSGEIVYAM 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00616 359 SMART serkin_6 21 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g00616 359 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524
Vian10g00616 359 FunFam Serine/threonine-protein kinase SRK2E 15 96 - -
Vian10g00616 359 FunFam Serine/threonine-protein kinase SRK2E 97 285 - -
Vian10g00616 359 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Vian10g00616 359 Gene3D Phosphorylase Kinase; domain 1 1 96 - -
Vian10g00616 359 ProSiteProfiles Protein kinase domain profile. 21 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g00616 359 Pfam Protein kinase domain 21 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g00616 359 Gene3D Transferase(Phosphotransferase) domain 1 97 283 - -
Vian10g00616 359 PANTHER SERINE/THREONINE KINASE 20 303 - -
Vian10g00616 359 SUPERFAMILY Protein kinase-like (PK-like) 14 318 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00616 Vian-Chr10 5897845 5907248 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00616 20 281 CBL-interacting serine-threonine protein kinases AT5G25110 43.223 7.48e-66 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vian10g00616 Pkinase 1.5e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00616 K14498 - gmx:100783967 642.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01695 1 19561711 19566184 Vian10g00616 10 5897845 5907248 PCT