Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00614 ATGGTAGTTTGTGATTTGTGGGAGCATACTCTCGCTCACAGAAAATCACCCAATTCCACTCAACAACATTCCAGCGCTTTCATGGAGCTCAGCTTGGACTTGAGTTTGGGCTTTGTTCCCAAACCCATTTCCCTCTTTTTTGCCGATGTTTCTGGCAACAGAGACAAGACCGACAAAGTTGCCACGCTCGACGGCTTCGTGCAGAGGTTGGAGGACGAATTGAGGAAAGTTGAGGCCTTCAAACGCGAGCTTCCTCTCTGTATGCTCCTCCTAAACGATGCTATCGCCAGATTGAAGGAGGAAAAAGTAAAGTGTTCAGTACTGCAAGATCCGCCTACCAATGAACAGTTTGTGCCACCGAAAACCAATTCTGGGGGAAGCGAAAATGAAAAATGTGAGAAGAAGAATTGGATGAGTTCAGCTCAGCTTTGGAGCACTCAGAAAATCAAATCGACGAATGAGGACGGTGACAGGTCTGTGCCACAGAATCCAATTAATGGGAATTGGTGTGCCCCGAGGAAGGAGAGTTCACAAATTCCGAGCTTTAGTTTGATGGGTCACGCATCTGAACTGAGTCATAGCAATTCCAAGAGTGTATGTGGAGATACTAGTTCTGGCTCTTCTTTGCTTCGTGTTGAGGTACAGAGCCAGCCCCAACCGCCGCAACATATGCAGCAGAATTCAAGGAAACAGCGGCGGTGCTGGTCACCGGAGCTGCACCGGCGTTTTGTGGATGCTCTTCAACAACTTGGTGGAGCACAAGTGGCCACCCCTAAACAGATTAGAGAACTGATGCAGGTGGATAGCCTGACAAATGATGAAGTGAAAAGCCATTTGCAAAAATACAGGCTTCATGTTAGGAGATTCCCAGTTTCATCAGTTGGGCAGGCTGATAATGGGTCATGGATGGGACAAGATGAATGTGGGGATAAATCAAAGGGAAACTTGTCACAGTCTGGTTCTCCTCAAGGTCCTCTGACACCTCTCCTGCTAGGAGGAGGAGGGTCTGCTAAGGGTATCTCAAGCCCTGGACGGAACAGTGTGGATGCAGAAGATGAGCAATCAGATTGCAGGAATTGGAAAGGAGGGCTGCACCAGCACCTTGAAGCTGATAACCAGAGCCTCTAA 1128 0.4832 MVVCDLWEHTLAHRKSPNSTQQHSSAFMELSLDLSLGFVPKPISLFFADVSGNRDKTDKVATLDGFVQRLEDELRKVEAFKRELPLCMLLLNDAIARLKEEKVKCSVLQDPPTNEQFVPPKTNSGGSENEKCEKKNWMSSAQLWSTQKIKSTNEDGDRSVPQNPINGNWCAPRKESSQIPSFSLMGHASELSHSNSKSVCGDTSSGSSLLRVEVQSQPQPPQHMQQNSRKQRRCWSPELHRRFVDALQQLGGAQVATPKQIRELMQVDSLTNDEVKSHLQKYRLHVRRFPVSSVGQADNGSWMGQDECGDKSKGNLSQSGSPQGPLTPLLLGGGGSAKGISSPGRNSVDAEDEQSDCRNWKGGLHQHLEADNQSL 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00614 375 MobiDBLite consensus disorder prediction 110 134 - -
Vian10g00614 375 MobiDBLite consensus disorder prediction 311 325 - -
Vian10g00614 375 MobiDBLite consensus disorder prediction 110 126 - -
Vian10g00614 375 NCBIfam myb-like DNA-binding domain, SHAQKYF class 230 285 IPR006447 GO:0003677
Vian10g00614 375 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 227 287 IPR017930 -
Vian10g00614 375 MobiDBLite consensus disorder prediction 213 232 - -
Vian10g00614 375 MobiDBLite consensus disorder prediction 294 375 - -
Vian10g00614 375 MobiDBLite consensus disorder prediction 349 365 - -
Vian10g00614 375 Coils Coil 63 83 - -
Vian10g00614 375 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 35 360 IPR044787 GO:0003700|GO:0006355
Vian10g00614 375 MobiDBLite consensus disorder prediction 149 174 - -
Vian10g00614 375 Gene3D - 229 286 - -
Vian10g00614 375 Pfam Myb-like DNA-binding domain 232 283 IPR001005 -
Vian10g00614 375 SUPERFAMILY Homeodomain-like 228 288 IPR009057 -
Vian10g00614 375 MobiDBLite consensus disorder prediction 213 233 - -
Vian10g00614 375 FunFam Myb family transcription factor 229 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00614 Vian-Chr10 5863007 5864777 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00614 20 280 G2-like Transcription Factor Family AT4G37180 41.489 1.52e-52 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vian10g00614 Myb_DNA-binding 2.3e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00614 - - pvu:PHAVU_002G021400g 683.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01694 1 19544470 19546322 Vian10g00614 10 5863007 5864777 PCT