Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00612 ATGTCATCATCATCGAATTCGCCGTGCGCGGCGTGCAAGTTTCTCAGGCGAAAATGCACGCAGGAGTGCGTGTTCGCACCGTACTTTCCGCCGGACAACCCTCAGAGGTTCGCTTACGTGCACAAGGTTTTCGGGGCCAGCAACGTGGCCAAGCTTCTCAATGAACTCAGCGCCTCGCAGCGAGACGACGCCGTAAAGTCCCTCGCTTACGAGGCCGAGGCTCGTCTCAGGGACCCCGTCTACGGCTGCGTGGGCCTCATCTCCGTCCTACAACACAGGCTCAGGCAGATCCAGGTGGAACTCAACAATGCAAAGAAGGAACTCGCAACATACATCGGTCCCCAAGCTTTTCAAGGCTTACCAGCCCCCATTCTCCAGCAGCACCCAAACAATCCTTTTTCCGGTTCCCTGTATGGGAGTATGGCGGGGGTGACGGCAGCCACTCACGGTGGGCAGCTGATGATTCGCGACGGCCAGTCGCCGCAGCAGCATCAGATCTTGGAGGCCCAGCAGTTGGCTGCGGCTGTGGCGGCGAGGGAGCAGCAGGAGATGTTCAGGGGTTACGAGCATCAACAGCAGCAGGAGTTTCTTAGGTTCAGTGGTGGGTTCGATGTGGGTTCTGCTTCTTCTGCTGGTGGGTTCAGCCAGATATCCCCAGCTGCTGCTTCCGCTGATCAGTTGTCTCCTTCGTTGGCTTTGGGATCCTTCGATAACCCTTATCACATGCAGCAGCCACAGCAAGGAGAGCCTCATCCTCACAACATTCCTTTCGAGGCTCAGCTTCTGCTCCCTCCCCAGCAGAAGCAATCGCCGCAACAAAGCCAGCAGTCCCAACTGCCCCTTCACCAGCCACAGTCTGAAAGCGAGGAGTGTAGGAGTCTTGGTCCATCCTGTTGA 897 0.5741 MSSSSNSPCAACKFLRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELSASQRDDAVKSLAYEAEARLRDPVYGCVGLISVLQHRLRQIQVELNNAKKELATYIGPQAFQGLPAPILQQHPNNPFSGSLYGSMAGVTAATHGGQLMIRDGQSPQQHQILEAQQLAAAVAAREQQEMFRGYEHQQQQEFLRFSGGFDVGSASSAGGFSQISPAAASADQLSPSLALGSFDNPYHMQQPQQGEPHPHNIPFEAQLLLPPQQKQSPQQSQQSQLPLHQPQSESEECRSLGPSC 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00612 298 Coils Coil 87 107 - -
Vian10g00612 298 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Vian10g00612 298 MobiDBLite consensus disorder prediction 232 250 - -
Vian10g00612 298 MobiDBLite consensus disorder prediction 232 298 - -
Vian10g00612 298 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 258 - -
Vian10g00612 298 MobiDBLite consensus disorder prediction 263 298 - -
Vian10g00612 298 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00612 Vian-Chr10 5842122 5843018 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00612 3 292 AS2 family AT5G66870 51.402 1.18e-77 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vian10g00612 LOB 1.2e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00612 - - gmx:102664012 465.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00612 10 5842122 5843018 Vian10g00612 10 5842122 5843018 ECH
Vian10g00612 10 5842122 5843018 Vian1g01692 1 19531156 19531977 PCT
Vian1g01693 1 19536807 19538882 Vian10g00612 10 5842122 5843018 PCT