Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00609 ATGTTGCCGTCGCAGTCACTCACAGTCACATCCCCGAACCTCACTTGCGCAGCACCGATGGCGAGAGCCAAAACCCTAAGGAGCTCGAGAACGCGATCGTTTCTGTCGCCCTCGCCGGCAAAGCACATAAGGGCGGCTCTGGCGCGGCGGCACGGGTCGGTGAAACCCAACGAGGCTGCCATACCTGAGGAAGAGGGGTTCTCTGTACTGAACAAGACTTTTGGATTCTCCAAACATTTCGGAAATAAATATGAAGTTGGAGATGAGGTTGGGAGAGGGCATTTTGGATACACTTGTGTTGCTAAGGTGAAGAAAGGAGTGGTGAAGGGGCAAGAAGTGGCCGTTAAAGTCATTCCAAAAGCCAAGATGACCACTGCAATTGCTATTGAAGATGTGAGAAGGGAGGTAAAAATTTTGAGAGCTTTGACTAGGCACAAGAATCTAGTACAATTCTATGATGCATATGAAGACCATGATAATGTCTATATAGTAATGGAGTTGTGTGAAGGAGGAGAGCTGTTAGACAGAATATTGTCAAGAGGTGGGAAGTACACAGAGGAAGATGCAAAAGTTGTCCTTAGACAAATACTGGATGTGGTTGCCTTTTGCCATCTTCAGGGTGTCGTGCACCGTGATCTTAAACCTGAGAACTTCTTGTTCACATCCAAGGACGAGAACTCAATCCTGAAGACCATAGACTTTGGGTTGTCAGATTTTGTTAAACCAGATGAAAGACTTAATGATATTGTTGGCAGTGCATACTATGTGGCACCCGAAGTTCTACATAGAGCTTACAGTACAGAAGCTGATGTATGGAGTATTGGAGTGATTGCATATATTTTAATATGTGGCAGTCGTCCCTTTTGGGCCCGGACCGAGTCTGGTATCTTCCATGCCGTGTTAAAAGCTGATCCAAGTTTTGATGAACCTCCTTGGCCTTCTCTGTCAGATGAGGCAACAAATTTTGTTATGCGATTACTAAATAAAGATCCACGGAAAAGAATGTCTGCAGCACAGGCACTATGTCATCCATGGATTAAAAACAAGGATGTGAAAGTACCTCTGGATATTCTAATATTCAAGCTCATGAAGGCATACATGCGTTCTTCATCTCTACGGAAAGCGGCTTTAAGGCTTAATGCATTACAATTTAGAAGGATGGATTTTGATGAGTTCTGTGCGGCTGCGCTTAGTGTTCATCAACTTGAAACACATGACCAGTGGGAGCAACGCGCACGTAATGCTTACGAACTTTTTGAAAAGGACGGAAACAAGGCCTTAGTCATTGACGAACTAGCTTCGGTGCTTGGGCTTGGTCCATCTGTCCCTGTTCATGCTGTTCTCCATGATTGGATTCGGCACACTGATGGAAAATTAAGTTTCATTGGGTTTGTCAAACTGTTGCATGGCCCATCTAGAAGTCTTGCAAAAGCTCAATAG 1440 0.4479 MLPSQSLTVTSPNLTCAAPMARAKTLRSSRTRSFLSPSPAKHIRAALARRHGSVKPNEAAIPEEEGFSVLNKTFGFSKHFGNKYEVGDEVGRGHFGYTCVAKVKKGVVKGQEVAVKVIPKAKMTTAIAIEDVRREVKILRALTRHKNLVQFYDAYEDHDNVYIVMELCEGGELLDRILSRGGKYTEEDAKVVLRQILDVVAFCHLQGVVHRDLKPENFLFTSKDENSILKTIDFGLSDFVKPDERLNDIVGSAYYVAPEVLHRAYSTEADVWSIGVIAYILICGSRPFWARTESGIFHAVLKADPSFDEPPWPSLSDEATNFVMRLLNKDPRKRMSAAQALCHPWIKNKDVKVPLDILIFKLMKAYMRSSSLRKAALRLNALQFRRMDFDEFCAAALSVHQLETHDQWEQRARNAYELFEKDGNKALVIDELASVLGLGPSVPVHAVLHDWIRHTDGKLSFIGFVKLLHGPSRSLAKAQ 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00609 479 FunFam CDPK-related kinase 3 76 248 - -
Vian10g00609 479 Gene3D Phosphorylase Kinase; domain 1 77 173 - -
Vian10g00609 479 ProSiteProfiles Protein kinase domain profile. 84 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g00609 479 SUPERFAMILY Protein kinase-like (PK-like) 81 373 IPR011009 -
Vian10g00609 479 Pfam Protein kinase domain 84 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g00609 479 FunFam CDPK-related kinase 1 77 172 - -
Vian10g00609 479 CDD STKc_CAMK 83 345 - -
Vian10g00609 479 SMART serkin_6 84 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g00609 479 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Vian10g00609 479 ProSitePatterns Protein kinases ATP-binding region signature. 90 116 IPR017441 GO:0005524
Vian10g00609 479 PANTHER SERINE/THREONINE-PROTEIN KINASE 71 453 - -
Vian10g00609 479 FunFam Calcium-dependent protein kinase SK5 256 351 - -
Vian10g00609 479 Gene3D Transferase(Phosphotransferase) domain 1 174 381 - -
Vian10g00609 479 SUPERFAMILY EF-hand 385 470 IPR011992 -
Vian10g00609 479 Gene3D - 383 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00609 Vian-Chr10 5795454 5800022 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00609 32 479 EF-hand Containing Proteins AT3G50530 66.913 0.0 706
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vian10g00609 Pkinase 3e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00609 K00924 - gmx:100803313 727.243