Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00594 ATGTCGCAACGATCTGTGCCGGCACCGTTTTTGACGAAGACGTATGAGTTGGTGGATGATCCAGGGACGAACGAGGTGATATCGTGGAGTGACAGTGGGAACACATTTGTTGTGTGGAAACATGCGGAATTTGCCAAGGATTTGCTTCCTAAATGTTTCAAGCACAATAACTTCTCCAGTTTTGTTCGCCAGCTCAACACCTACGGATTCCGAAAGATTGTGCCAGATAAATGGGAATTCGCAAACGAACATTTCAAGCGAGGGCACAAGGAGCTTCTCTGCGACATTAAACGCCGCAAGACCGTGCCGCAATTGCATGCGCTTCCACCGGAGGCCGGAAAATCCAGCGGGGGTGGTAACTCTCCGTTAAACTCCGGCGGTGGAGATGACGCTGGGTCCACCTCTACCTCGTCCTCCTCCTCCGGTTCGAAGAACACGGGGTTGGTGGAAACAAACACAACAGCTTCTCATGAGTTATCGAGCGAGAACCAGAAACTGAAGAAGGATAACGAAACGCTGAGTTGCGAGCTGGCACGTGCGAGGAAGCAGTGCGATGAGCTCGTTGCTTTTCTCAAGAACCGTCTGATGGTGGGTCCTGATCAGATAGATCGCATCATGCGGCAAGGAAGTTGCGGATCTGAGAAGGCGGTAGGTGAAGAAGGTGGTGGGGAGTGTTTGAAACTGTTTGGTGTTTGGTTGAAAGAGGATACACTAGCAGACAAAAGAAACAACAAGAACAAGAGAGCGCGCGAAGACCAAATGGGCTTCGGTGGGCCTCGCCTCAAGAAGTCCAAGCCCGTTGTTGATTTTGAACCTATAAATCTCATCATGACTAGCAATAAGGTTTGCAACTGA 855 0.5018 MSQRSVPAPFLTKTYELVDDPGTNEVISWSDSGNTFVVWKHAEFAKDLLPKCFKHNNFSSFVRQLNTYGFRKIVPDKWEFANEHFKRGHKELLCDIKRRKTVPQLHALPPEAGKSSGGGNSPLNSGGGDDAGSTSTSSSSSGSKNTGLVETNTTASHELSSENQKLKKDNETLSCELARARKQCDELVAFLKNRLMVGPDQIDRIMRQGSCGSEKAVGEEGGGECLKLFGVWLKEDTLADKRNNKNKRAREDQMGFGGPRLKKSKPVVDFEPINLIMTSNKVCN 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00594 284 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian10g00594 284 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian10g00594 284 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian10g00594 284 MobiDBLite consensus disorder prediction 117 160 - -
Vian10g00594 284 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian10g00594 284 SUPERFAMILY "Winged helix" DNA-binding domain 7 99 IPR036390 -
Vian10g00594 284 Coils Coil 156 183 - -
Vian10g00594 284 Gene3D - 2 101 IPR036388 -
Vian10g00594 284 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian10g00594 284 FunFam Heat stress transcription factor B-4 2 100 - -
Vian10g00594 284 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian10g00594 284 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 209 IPR027725 -
Vian10g00594 284 MobiDBLite consensus disorder prediction 106 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00594 Vian-Chr10 5618840 5620381 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00594 2 284 HSF AT4G36990 51.178 1.23e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vian10g00594 HSF_DNA-bind 5.9e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00594 K09419 - gmx:100791543 453.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00594 10 5618840 5620381 Vian10g00594 10 5618840 5620381 ECH
Vian10g00594 10 5618840 5620381 Vian1g01664 1 19085500 19088105 PCT