Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00587 ATGATGGAGCAGCGAAAGCTTGTGGTTTTGGGAATTCCGTGGGATGTTGATACTGAAGGATTAAGGGAATATATGAGCAAATTTGGCGAGCTGGAAGATTGCATTGTAATGAAGGAGCGGTCAACTGGACGGTCTCGTGGTTTTGGATATGTTACATTTGCTTCAGTGGATGATGCTAAGGAAGTATTATCAAGTGAACACATTCTTGGTAATAGGACACTGGAAGTCAAAGTGGCTACACCGAAGGAGGAAATGAGGGCACCAGTCAAAAAGGTTACTAGAATATTTGTAGCCAGGATCCCACAATCGGTAACAGAAGCTGCTTTCCGAAGTCATTTTGAGAAGTATGGTGATATAACAGATCTGTACATGCCAAAGGATCAAGGCTCCAAAACACATCGTGGAATTGGTTTCATCACTTTTGCTAGTGCAGATTCTGTGGAGAATTTGATGTCAGAAACCCATGAACTGGGAGGTTCTGCGGTGGTGGTTGATCGAGCAACACCTAAGGATGAAGACTTTAAGCCAATTGGCAGCAGAATGCCACCACAAGGAGGATATGGTGCATACAATGCTTACATTTCTGCAGCCACTAGATATGCAGCACTTGGTACTCCTACTTTGTATGATCATCCTGGCCCAATTTATGGACGGGGAGAACCTGCTCGTAGAACTAGTAAAAAGATTTTTGTTGGTCGTCTACCCCCAGAAGCATCTTCTGAGGATCTTCGTCAATATTTTGGAAGATTTGGCCGTATATTAGATGTTTATGTTCCAAGGGATCCTAAGAGAACAGGCCACAGAGGTTTTGGATTTGTTACTTTTGCTGAAGATGGTGTAGCAGATCGTGTCTCACGAAGGTCTCATGAGATTTGTGGACATCAGGTTGCAATAGATTCGGCTACACCCGTTGATGATGCAGGGCCCAGTGGGAATTTCATGATGGAATCTTTTGGGGGATATGGCGGTCCTGTGCGATCTTATGGGAGGATGTATGGTAGCTTAGACTTTGACGATTGGGGTTATGGAATTGGGAGACCATCAAGAGCAGATTGGAGGTATAGACCATACTAG 1074 0.4423 MMEQRKLVVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSSEHILGNRTLEVKVATPKEEMRAPVKKVTRIFVARIPQSVTEAAFRSHFEKYGDITDLYMPKDQGSKTHRGIGFITFASADSVENLMSETHELGGSAVVVDRATPKDEDFKPIGSRMPPQGGYGAYNAYISAATRYAALGTPTLYDHPGPIYGRGEPARRTSKKIFVGRLPPEASSEDLRQYFGRFGRILDVYVPRDPKRTGHRGFGFVTFAEDGVADRVSRRSHEICGHQVAIDSATPVDDAGPSGNFMMESFGGYGGPVRSYGRMYGSLDFDDWGYGIGRPSRADWRYRPY 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00587 357 SUPERFAMILY RNA-binding domain, RBD 89 190 IPR035979 GO:0003676
Vian10g00587 357 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 5 81 IPR000504 GO:0003723
Vian10g00587 357 FunFam heterogeneous nuclear ribonucleoprotein 1 85 177 - -
Vian10g00587 357 FunFam heterogeneous nuclear ribonucleoprotein 1 3 84 - -
Vian10g00587 357 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 169 IPR000504 GO:0003723
Vian10g00587 357 SUPERFAMILY RNA-binding domain, RBD 223 326 IPR035979 GO:0003676
Vian10g00587 357 Gene3D - 2 88 IPR012677 -
Vian10g00587 357 Gene3D - 89 176 IPR012677 -
Vian10g00587 357 SMART rrm1_1 6 77 IPR000504 GO:0003723
Vian10g00587 357 SMART rrm1_1 94 165 IPR000504 GO:0003723
Vian10g00587 357 SMART rrm1_1 228 299 IPR000504 GO:0003723
Vian10g00587 357 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 227 303 IPR000504 GO:0003723
Vian10g00587 357 FunFam RNA-binding family protein isoform 1 224 307 - -
Vian10g00587 357 SUPERFAMILY RNA-binding domain, RBD 3 86 IPR035979 GO:0003676
Vian10g00587 357 Gene3D - 222 307 IPR012677 -
Vian10g00587 357 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7 74 IPR000504 GO:0003723
Vian10g00587 357 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 229 283 IPR000504 GO:0003723
Vian10g00587 357 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 153 IPR000504 GO:0003723
Vian10g00587 357 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 225 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00587 Vian-Chr10 5551011 5554513 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00587 18 275 Eukaryotic Initiation Factors Gene Family AT2G36660 24.427 8.73e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00587 K14411 - gmx:100795240 694.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00587 10 5551011 5554513 Vian10g00587 10 5551011 5554513 ECH