Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00585 ATGGACGTGGACATACTCAAAACTTCCACGAGTGATACCAGCATGGACATGATCATGATGATGCAAATGGAAAAGTTCCCGGAGTTATGTGAGCCTTTTTATAACAACACCACTCCTCTCTACCCAGAAAACGAGTTCTTAAACTCCACCACCTCCACCACTTCACTACCTGTGTTCTCCAACGTTAACCCAAACGTTATAACTCCACCACCCACTTTGATCAATCCACCGCCACCACCTTCCTCTAATTTTGTTCTCCAACAACCCATGACACCTCCTCTACAACCCAACCCTTCGTTCTCGGAGAAGAAGAATTCCGTGGCGGCCATGAGGGAGATGATTTTCCGCGTAGCGGTGATGCAACCTATTCATATAGACCCTGAATCTATCAAGCCTCCCAAGAGAAGGAACGTGAAGATTTCGAAGGATCCGCAGAGTGTGGCAGCGAGGCACAGAAGGGAAAGGATTAGCGAGCGAATAAGGATCCTTCAGAGATTAGTCCCTGGTGGGACCAAAATGGACACGGCTTCTATGTTGGACGAAGCCATACACTACGTAAAGTTCTTGAAGAAACAAGTCCAGACGCTGGAACAAGCCGGAGCAAGTAGACCCTTGAGCGTTTTTGGCTTTCCTAGTACTGTGTCCAATAATAACGTTAATTATTCCTCCTTCATGAAGAGTTGCCAACCGTGTCATATGCTGGGTTCTGCAGCTTCTAAACACATGCTGAGTTGA 735 0.4694 MDVDILKTSTSDTSMDMIMMMQMEKFPELCEPFYNNTTPLYPENEFLNSTTSTTSLPVFSNVNPNVITPPPTLINPPPPPSSNFVLQQPMTPPLQPNPSFSEKKNSVAAMREMIFRVAVMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGASRPLSVFGFPSTVSNNNVNYSSFMKSCQPCHMLGSAASKHMLS 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00585 244 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 55 230 IPR045843 GO:0003700|GO:0006355
Vian10g00585 244 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 144 199 IPR036638 GO:0046983
Vian10g00585 244 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 140 189 IPR011598 GO:0046983
Vian10g00585 244 Gene3D - 139 204 IPR036638 GO:0046983
Vian10g00585 244 FunFam BHLH transcription factor 143 205 - -
Vian10g00585 244 CDD bHLH_AtIND_like 141 197 - -
Vian10g00585 244 Pfam Helix-loop-helix DNA-binding domain 150 189 IPR011598 GO:0046983
Vian10g00585 244 Coils Coil 179 199 - -
Vian10g00585 244 SMART finulus 146 195 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00585 Vian-Chr10 5530367 5531101 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00585 23 198 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G67060 59.563 3.56e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian10g00585 HLH 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00585 - - gmx:100796649 333.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00585 10 5530367 5531101 Vian10g00585 10 5530367 5531101 ECH