Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00583 ATGAACTGGGTTCGCGGAGAATCACTCGGCAGTGGAACCTTCGCCACCGTCAACATCGTCGTCCCTGCTAACGGCTCCACTCGGTTCCCTTCTCCCGTCGCCGTCAAATCCTCTGATTCCGACAACGCGGGTTCGCTCCAACACGAAAAGGAGATATTCGATCGCCTTGGCTCTTCCCCTTACATCATCAAGTGTTTCGGCCACGATCACACCGTCGAGAACGGCGAGGAGTTCTACAACGTATTCCTCGAACGCGCCACCGAAGGGTCCCTCGCCGACCAGGTCAAGAAACACGGTGGAAGCCTCCCGGAGCCTTTCGTCCGGCGATGCACGAGGTCTATCGTGGAAGGGCTCAAACATATTCACGAGCAAGGTTTCGTTCACTGCGACGTGAAGCTTCAGAACGTTCTCGTTTTCGACGGCGAGGTGAAAATTGCGGACTTCGGGCTCGCCAAGGAGAAGGGGGAGAAACAAGGGAAGTGCGAGTTCAGGGGAACGCCATTGTTTATGTCGCCGGAATCGGTGAACGACAATGAATATGAGCCGCCGGCGGATATTTGGGCCCTGGGATGCGCCGTCGTGGAGTTGGTGACCGGAAAACCCGCGTGGGATGTTAGCAACGGTTCCAGTATTTGGTCATTGATGATTCGGATTGGAGTGGGAGAAGAATTGCCAAAGATTCCAGAAGAATTGTCGGAAGAGGGGAAGGACTTTTTGGAGAAGTGCTTTGTTAAGGATCCCAAGAACAGGTGGAGCGCTGAGATGCTTCTGAAGCACCCTTTCATCAAAGTTGACTCATTTTCGTTCGAGAAAGTTCATCAACCGTTACCGTCGCCGTCGCCGAGGTCCCACTTCGATTTTCCTGACTGGGCTTCCACCGTAATGGCTTCACTCCCGTCGTCCCTGGATTCCGATGAGCACTCTGGGTGGTCGAGTTCTTCGGAGAGTCGTCTCCGGCAGCTTGTCACCGATAAGACACCGGAGAATTGGTCAGAATCGGATGGCTGGATCAGCGTTAGGTGA 1023 0.5435 MNWVRGESLGSGTFATVNIVVPANGSTRFPSPVAVKSSDSDNAGSLQHEKEIFDRLGSSPYIIKCFGHDHTVENGEEFYNVFLERATEGSLADQVKKHGGSLPEPFVRRCTRSIVEGLKHIHEQGFVHCDVKLQNVLVFDGEVKIADFGLAKEKGEKQGKCEFRGTPLFMSPESVNDNEYEPPADIWALGCAVVELVTGKPAWDVSNGSSIWSLMIRIGVGEELPKIPEELSEEGKDFLEKCFVKDPKNRWSAEMLLKHPFIKVDSFSFEKVHQPLPSPSPRSHFDFPDWASTVMASLPSSLDSDEHSGWSSSSESRLRQLVTDKTPENWSESDGWISVR 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00583 340 ProSiteProfiles Protein kinase domain profile. 3 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g00583 340 CDD STKc_MAPKKK 2 262 - -
Vian10g00583 340 Gene3D Transferase(Phosphotransferase) domain 1 93 284 - -
Vian10g00583 340 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
Vian10g00583 340 Gene3D Phosphorylase Kinase; domain 1 1 92 - -
Vian10g00583 340 SMART serkin_6 3 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g00583 340 Pfam Protein kinase domain 5 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g00583 340 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Vian10g00583 340 FunFam Mitogen-activated protein kinase kinase kinase 17 2 294 - -
Vian10g00583 340 MobiDBLite consensus disorder prediction 300 340 - -
Vian10g00583 340 SUPERFAMILY Protein kinase-like (PK-like) 3 309 IPR011009 -
Vian10g00583 340 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00583 Vian-Chr10 5511674 5512696 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00583 1 340 MAP Kinase Kinase Kinase AT3G50310 51.841 4.98e-119 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vian10g00583 Pkinase 5.5e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00583 - - gmx:100797177 511.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00583 10 5511674 5512696 Vian10g00583 10 5511674 5512696 ECH
Vian10g00583 10 5511674 5512696 Vian1g01657 1 18967287 18968321 PCT