Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00582 ATGGCGGACGAGGAGCCAGTAAGCGGAAGGAGAAGGCCCAGGGGACCGGAGTCCACCGCTCGCAGCGAAGCGTTGGAGCGTCTCAAGGCCCGCCTCCGCGGTGGTCGTCGATCCGATGGCACTGGGCCTCAAATCAGGTTAGAAAACCCTGTCTACGACACTGTCCCTGAGGACGAGTACAATGCCCTCGTCGCCAAGCGCCGTGAACAGGCGCGCTCCTTTATAGTCGACGACGAAGGAATCGGATACGGCGATGAGGGCGAGGAAGAGGACTGGTCTCAGGCCGGATTCACTCTCTCCTCTGATGAATCCGAAGGCGAGTCGGAGAGGCCGAAACGGAAGAAGGTCGAGAAGAAGGATCCTCAGCCGAAACGGCCTTCTTCATCGCTCTCCGCCGCTGCGGCCATGATGGGAGGGCAGAGGTTGTCCTCCATGTTCACTTCCTCCGTTTTCAAGAAGAGCAGAGACGACAAAGTCTGCGAGAGCATCGTCGACGATGTTATCGCGGAGTACGCTGCGGACGAGACTGATAGACTGAGGCGTAGAAGGGCGAAAGGGAATTCCTCTTCCACTTCTGACGCAAACAATGTTTTGCGTGTTAATACCGCGTTTAGGGATAAGCCTTCTGTTTGTATGATACAAGATTCTTCTTCATTGCCGGAACATGGTAACCCCGACTCTGTTAAGGTATTTGTTGAGAGTGGTGGTTTTGACTCGGGGTTTGAGCCAAAGAGCGTGGTGGTTAGTGAAGTCCAAGATTTCGGGCGTGGTAGTTCTGAGAATGGGCAGACACCGACGGTGGTAGCCAATGATTCTCAAGTTAAAGAATGTATGGTTGAAGTGAAAGCGGATGCAAAGAAGGAGGTGTTCACTTTGAACGCGAAGGTTAAAGAAGCGGACGACACTGCATTGTCTGCTACTGCTGGTTGGAAGGAAGCAATACGCGGTGCTGGTGGGGTTGATGTTACTGATTCAAAGGATGCTTTGGAGAACTTACACTTAGAGTTTGATCTGGAGGAAGATGGATCACTGCCTTTCTACATATTAGACTCCTACGAGGAGTTTTATGGGGAAAACAGGGGCACCATTTATCTCTTTGGGAAGGTTAAGACTGGGGATTTGTATCAGAGTTGTTGTGTTATTGTCAAGAGCATGCAGAGGTGTGTCTATGCAGTTCCTAGCCGACCCTTGCTTCGCACTGAAGAGATGATGAGTCTCGAGAGAGATGTCCAGGAGTCTCGAATTTCTTCTGCGGATTTCTTTAAAAAGCTGCAAGATGCAGTAGCTGATGTTAAGAATGAGATAGCACAACATCTGGTGAATTTGGATGTTTCGAACTTTAGTATGGCACCTGTTAAGAGGAAATATGCATTTGATCGATTTGAAGTTCCTACAGGGGAAAATTATGTGATAAAGGGGCCTTCATGGCTACAGGTTTCAAAGTTTGCTACAAGCTCATCTTCCCGAAGGGTTAGCTGGTGCAAATTTGAAGTAACTGTTGACTCTCCTAAACACATAAAAACATCAGCTCCTTCAAAAATCACTTATAATATTCCTCCAGTGGTTGTTGCAGCAATAAACTTGAAAACCACCATAAATGAAAAGCAGAATATAAATGAGATTGTATCAGCATCCGTTGTCTGTTGTAACATGGTTAAGATTGATGCCCCTATGATGGCTTCAGAGTGGAGGAGACCCGGAAGGCTGACCCATTTTACTGTTGTTCGTAAACTTGATGGGAGTATATTTCCAATGGGATTCAACAAGGAGGTTACGGACAGAAACTTAAAAGCTGGTTCAAATATTCTGTGTGCTGAAAGCAGTGAAAGAGCTTTATTGAACCGCTTGATGTTAGAATTGCACAAGTTGGATTGCGATGTTCTGGTTGGACATAATATATCTGGATTTGACCTGGATGTTCTTCTCCACAGATCCCAGGCCTGCAAAGTGGCAAGCAGCATGTGGTCTAAACTAGGCCGCCTCAACAGATCGACTATGCCTAAACTTGGAAGAAGAAGTAAGGTTTTTGGTTCTGGAGCAGATCCTGGTATCATGTCATGCATTGCTGGCAGGCTTCTTTGTGATACATACTTGTGTTCCCGTGACCTATTAAAGGAGGTTAGTTACTCTTTAAGTCACCTTGCAAAATCACACCTGAACAAGTTTCGGAAGGAAGTTGCTCCACATGAAGTTCCAAAAATGTTCCAGTCAGCAGAATCGCTAATGGAGCTTATTGAATACGGTGAAACAGATGCATGGTTGTCTATGGAACTAATGTTTTATTTAAGTATTCTTCCACTCACCCGTCAGCTGACTAATATAAGTGGTAATCTGTGGGGGAAAACTCTTCAGGGTGCTCGAGCACAGAGGGTTGAATATCTTTTGCTGCATACTTTCCATGCAGTGAAATATATGGTGCCAGACAAGTTCTCAAACTATTCTAAAGAAACGAAATTGACGAAACGTAGAGTAACCCACGATGCTGAAGATAGCAACTACGATGTAGATGTTGACGATGTAAACTATGACAATGACGCTTCTGAAGCTGATAATAAGAAAAGCAAAAAGGGTCCTTCTTATGCTGGGGGACTGGTTTTGGAGCCAAAGAAGGGTCTATATGACAAATATATACTGCTTCTGGATTTCAACAGTCTTTATCCTTCTATTATTCAGGAATACAATATTTGCTTTACAACTGTTGAAAAATCTTTGGATGGATCTTTTCCACGTCTACCATCTAGTAAAACAACTGGAGTCTTGCCAGAGGTGCTGAAAAATCTGGTAGATAGGAGGAAGAAGGTAAAGTCGTGGATAAAGAATGAAAAAAAGAAGAATGAAAAAGCTGATCCTATAAGGGTTCAGCAACTGGATATTCAGCAGCAAGCACTAAAGCTTACTGCTAACAGTATGTATGGGTGCCTGGGATTTTCCAATTCAAGATTTTATGCTAAGCCGTTGGCTGAGCTTATTACTTTACAAGGAAGGGAGATACTGCAGAGTACTGTTGATTTAGTTCAGAATGCCTTGAATTTAGAGGTTATCTCTAGTACTCTTCATCTTGAAGTGATCTATGGCGACACGGATTCAATAATGATTTACAGTGGGCTGGATGATATTGAGGAAGCTAATAAAATTGCTGTAAAAGTTATTCAAGAGGTCAATAAGAAATATAAATGTTTGGAAATTGATCTTGATGGTTTATATAAAAGAATGCTGCTTCTCAAGAAAAAGAAGTATGCAGCTGTAAAGTTGCTGTTTAAAGATGGCACCCCATATGAGGTGATTGAACGTAAAGGTCTTGACATTGTTCGTCGTGACTGGAGCTTATTAGCTAAAGAATTAGGAGATTTTTGCTTGACTCAAATTTTGTCTGGAGGGTCATGTGAAGATGTAGTGGAGTCAATCCACAACTCGCTCATGAAGGTACAAGAAGAAATGAGGAACGGACAAGTACCATTAGAGAAATATGTCATTACGAAGACATTGACTAAACCTCCTGAAGCTTATCCTGATGCCAAGAACCAGCCACATGTGGCACAAAGATTGAAGCAACAAGGTTACTCTTCTGGCTGTTCTGTTGGTGATACAATCCCGTATATAATTTGTTATGAACAGGGTGGCAGTTCAGGCAGTGCTGGAGGCATTGCTCAACGTGCTAGACATCCTGAAGAACTTAAACGGGAACAAGGGACATGGCTGATTGACATTGATTACTATTTATCACAACAGATCCATCCCGTAGTATCACGCCTCTGTGCATCAATTCAGGGAACAAGCCCAGAAAGACTGGCTGATTGCTTAGGTCTTGACTCCTCAAAGTTTCATCATAAATCAAGTGAAGCTTTTAATGATGATTCTAGCAGTTTACTCTTGTCTGCTGCTAATGATGAAGAGAGGTATCGGGGATGTGAGCCGTTGGTGTTGTCATGCCCCAGCTGCTCTGGTACATTTGACTGCCCACCCGTCTCTAAATCTATTTGCTGCTTCTTGGGAAGTGGAATGACAACCAGCGTATCCACCGAGGAATCTGACTTCAATTTCTGGCGTAAGCTGTGTTGTCCTAAATGCCCCGAAGATGTCAAAATTTCTCCAGCGATGATAGCGAATCAGGTCAAAAGGCAAGCAGATATGTTTGTTTTGATGTACTATAAAGGTTTACTAACGTGTGATGATGAAACGTGTAAGCATACAACGCGAAGTATCAGCCTTCGGTTGGTTGGTGATTCCGAGAGAGGAACTGTTTGTCCAAATTATCCTCGCTGCAATGGTCGTCTGCTTAGAAAGATGGAGGCCAAATCTAGAATAACTATAGAGAAAGAGTTGATAAAAATTAGGCCGATGATTGATCCAGCAGCTTCAACAGCGCAGAAGATCAGGGACCGTTGTGCCTTTGGATGGGTGAGACTGGAGGATCTGGTCATATCAGTTTAA 4431 0.4394 MADEEPVSGRRRPRGPESTARSEALERLKARLRGGRRSDGTGPQIRLENPVYDTVPEDEYNALVAKRREQARSFIVDDEGIGYGDEGEEEDWSQAGFTLSSDESEGESERPKRKKVEKKDPQPKRPSSSLSAAAAMMGGQRLSSMFTSSVFKKSRDDKVCESIVDDVIAEYAADETDRLRRRRAKGNSSSTSDANNVLRVNTAFRDKPSVCMIQDSSSLPEHGNPDSVKVFVESGGFDSGFEPKSVVVSEVQDFGRGSSENGQTPTVVANDSQVKECMVEVKADAKKEVFTLNAKVKEADDTALSATAGWKEAIRGAGGVDVTDSKDALENLHLEFDLEEDGSLPFYILDSYEEFYGENRGTIYLFGKVKTGDLYQSCCVIVKSMQRCVYAVPSRPLLRTEEMMSLERDVQESRISSADFFKKLQDAVADVKNEIAQHLVNLDVSNFSMAPVKRKYAFDRFEVPTGENYVIKGPSWLQVSKFATSSSSRRVSWCKFEVTVDSPKHIKTSAPSKITYNIPPVVVAAINLKTTINEKQNINEIVSASVVCCNMVKIDAPMMASEWRRPGRLTHFTVVRKLDGSIFPMGFNKEVTDRNLKAGSNILCAESSERALLNRLMLELHKLDCDVLVGHNISGFDLDVLLHRSQACKVASSMWSKLGRLNRSTMPKLGRRSKVFGSGADPGIMSCIAGRLLCDTYLCSRDLLKEVSYSLSHLAKSHLNKFRKEVAPHEVPKMFQSAESLMELIEYGETDAWLSMELMFYLSILPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHTFHAVKYMVPDKFSNYSKETKLTKRRVTHDAEDSNYDVDVDDVNYDNDASEADNKKSKKGPSYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVEKSLDGSFPRLPSSKTTGVLPEVLKNLVDRRKKVKSWIKNEKKKNEKADPIRVQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITLQGREILQSTVDLVQNALNLEVISSTLHLEVIYGDTDSIMIYSGLDDIEEANKIAVKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKLLFKDGTPYEVIERKGLDIVRRDWSLLAKELGDFCLTQILSGGSCEDVVESIHNSLMKVQEEMRNGQVPLEKYVITKTLTKPPEAYPDAKNQPHVAQRLKQQGYSSGCSVGDTIPYIICYEQGGSSGSAGGIAQRARHPEELKREQGTWLIDIDYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSKFHHKSSEAFNDDSSSLLLSAANDEERYRGCEPLVLSCPSCSGTFDCPPVSKSICCFLGSGMTTSVSTEESDFNFWRKLCCPKCPEDVKISPAMIANQVKRQADMFVLMYYKGLLTCDDETCKHTTRSISLRLVGDSERGTVCPNYPRCNGRLLRKMEAKSRITIEKELIKIRPMIDPAASTAQKIRDRCAFGWVRLEDLVISV 1476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00582 1476 Gene3D - 339 423 - -
Vian10g00582 1476 Gene3D Palm domain of DNA polymerase 846 1085 IPR023211 -
Vian10g00582 1476 Gene3D - 1100 1285 IPR042087 -
Vian10g00582 1476 SUPERFAMILY Ribonuclease H-like 340 807 IPR012337 -
Vian10g00582 1476 Gene3D DNA Polymerase alpha, zinc finger 1293 1433 IPR038256 -
Vian10g00582 1476 MobiDBLite consensus disorder prediction 103 124 - -
Vian10g00582 1476 Pfam DNA polymerase family B 778 1254 IPR006134 GO:0000166|GO:0003677
Vian10g00582 1476 Pfam DNA Polymerase alpha zinc finger 1293 1432 IPR015088 GO:0003887|GO:0006260
Vian10g00582 1476 Coils Coil 421 441 - -
Vian10g00582 1476 Coils Coil 1036 1070 - -
Vian10g00582 1476 FunFam DNA polymerase 1100 1284 - -
Vian10g00582 1476 Pfam DNA polymerase family B, exonuclease domain 376 712 IPR006133 -
Vian10g00582 1476 SUPERFAMILY DNA/RNA polymerases 851 1270 IPR043502 -
Vian10g00582 1476 MobiDBLite consensus disorder prediction 1 57 - -
Vian10g00582 1476 Gene3D - 519 835 IPR036397 GO:0003676
Vian10g00582 1476 Pfam DNA polymerase alpha subunit p180 N terminal 25 92 IPR024647 -
Vian10g00582 1476 FunFam DNA polymerase 519 833 - -
Vian10g00582 1476 Gene3D Helix hairpin bin 923 973 - -
Vian10g00582 1476 MobiDBLite consensus disorder prediction 835 860 - -
Vian10g00582 1476 Gene3D - 469 513 - -
Vian10g00582 1476 PRINTS DNA-directed DNA-polymerase family B signature 1022 1030 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vian10g00582 1476 PRINTS DNA-directed DNA-polymerase family B signature 877 890 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vian10g00582 1476 PRINTS DNA-directed DNA-polymerase family B signature 960 972 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vian10g00582 1476 MobiDBLite consensus disorder prediction 1 36 - -
Vian10g00582 1476 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 17 472 - -
Vian10g00582 1476 SMART polmehr3 519 1036 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vian10g00582 1476 CDD DNA_polB_alpha_exo 519 770 - -
Vian10g00582 1476 ProSitePatterns DNA polymerase family B signature. 1024 1032 IPR017964 GO:0000166|GO:0003676
Vian10g00582 1476 FunFam DNA polymerase 918 974 - -
Vian10g00582 1476 CDD POLBc_alpha 853 1270 IPR045846 GO:0003887|GO:1902975
Vian10g00582 1476 NCBIfam DNA polymerase (pol2) 469 1252 - -
Vian10g00582 1476 MobiDBLite consensus disorder prediction 74 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00582 Vian-Chr10 5494886 5507029 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00582 2 1474 Core DNA Replication Machinery Family AT5G67100 57.417 0.0 1678
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00582 K02320 - gmx:100798779 2387.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00582 10 5494886 5507029 Vian10g00582 10 5494886 5507029 ECH