Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00579 ATGCCCTTCTTCCTTTTCCTTTTCCTTTTCCACAAGTTTCTGAAAGTGGTTGGTTGCATTACCATTTACTACTTTCTTTCTCAACACACGGAAACAAAATCAACAAAACCACCCCAACTCAATCCATCTCTGCATTCTTCTTTTTTTTCTGCTCACACACCTGTAGGAATGGGCGACATGTACCACTTTGACAAGAATCTCTCTTCGCAGGACGAAATCTCACTTTTTCTGCGTCAGATTCTCCTCCGTTCATCTCCTTCTTCTTCTTCATCACCCCACTCCGTCCCCGGATCCTGCAACTCCAACATATCTCACCAAAACGTCAATTCTCACGCTTCTTTCACGCCCTCGCACCTCCAACACGGCAAGATCTCGAACCTTGGTTCCACCGCCTCTTTTGTCTCGCCTTCTGGCACTTGCGGTTCCTTCAAGGCCCAGACTGCTTCTGCTGCAAATGTGTCTTCTTCTTCTGTTTTAGTGAGCGAGAACGAGAATGATGACTATGATTGTGAAAGTGAGGAGGGTGTCGAAGCTTTGGCCGAAGAACTTCCAACAAAGCCTATTCCTTCAAGGAATTCATCTAAGAGATCAAGAGCTGCTGAAGTTCATAATTTGTCTGAGAAGCGAAGAAGGAGTAGGATCAACGAGAAAATGAAGGCCTTGCAAAATCTAATTCCGAATTCTAACAAGACGGACAAGGCTTCAATGCTCGATGAAGCTATTGAATACCTTAAACAACTTCAGCTGCAAGTACAGATGCTGTCAATGAGAAATGGGTTGACTTTGCATCCTATGTGCTTTCCAGAAGGCTTACAGCCACTGCAGTTATCTCAGATGGGCATGGAACTGAGTGAAAGAAACAGGTCTACCACTTTAAACATGACAGCTACTCTGCCTCTCCACCAAGAGAACCCCTTGCACTACACATCCAATCTACCTAGCAAACACATTCTGCCAAATCAGCCATCTGCACCATATCCTTCATTTATTAACAACCCAGAAACTTCTTTTGGGCTGGAATCCCGAATCCAACCAGAAACAAAACCTCTTCAACACAAAGGAGGACCTTCTGGGCAACCAAGTGCTATCCATTCAGATGCTAATACATTAGGTAGTTCTCAAGTATCACTCTCCTTTGACACGCAAACATGCGAACCATGCATTGGCCGAAGAGAACAGTCAGGAATGATCATAAGAAATAGTGAGGCCAACATTGTTGTTACATCGCAGTTAAGTAGCACACGAGACTGCAATGCAGTGCAGAGAGAAAAAGGTGGTGGCAGTGGGAACTCGAAGACCGAGATTTTTGAAGTTTACAAGTTTAGTCTTGCAATGCTTTTTGAATTTTGGTTTCCCCGTAAAAGTAGGAATACCGATCCTTTGAGTTGA 1389 0.4413 MPFFLFLFLFHKFLKVVGCITIYYFLSQHTETKSTKPPQLNPSLHSSFFSAHTPVGMGDMYHFDKNLSSQDEISLFLRQILLRSSPSSSSSPHSVPGSCNSNISHQNVNSHASFTPSHLQHGKISNLGSTASFVSPSGTCGSFKAQTASAANVSSSSVLVSENENDDYDCESEEGVEALAEELPTKPIPSRNSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLTLHPMCFPEGLQPLQLSQMGMELSERNRSTTLNMTATLPLHQENPLHYTSNLPSKHILPNQPSAPYPSFINNPETSFGLESRIQPETKPLQHKGGPSGQPSAIHSDANTLGSSQVSLSFDTQTCEPCIGRREQSGMIIRNSEANIVVTSQLSSTRDCNAVQREKGGGSGNSKTEIFEVYKFSLAMLFEFWFPRKSRNTDPLS 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00579 462 SMART finulus 204 253 IPR011598 GO:0046983
Vian10g00579 462 MobiDBLite consensus disorder prediction 347 368 - -
Vian10g00579 462 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 195 259 IPR036638 GO:0046983
Vian10g00579 462 Gene3D - 193 257 IPR036638 GO:0046983
Vian10g00579 462 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 65 358 IPR031066 -
Vian10g00579 462 Pfam Helix-loop-helix DNA-binding domain 202 248 IPR011598 GO:0046983
Vian10g00579 462 MobiDBLite consensus disorder prediction 186 210 - -
Vian10g00579 462 MobiDBLite consensus disorder prediction 196 210 - -
Vian10g00579 462 FunFam Basic helix-loop-helix transcription factor 193 256 - -
Vian10g00579 462 MobiDBLite consensus disorder prediction 86 119 - -
Vian10g00579 462 CDD bHLH_AtPIF_like 198 261 IPR047265 -
Vian10g00579 462 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 198 247 IPR011598 GO:0046983
Vian10g00579 462 Coils Coil 237 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00579 Vian-Chr10 5476777 5479997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00579 61 279 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 51.852 1.16e-49 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian10g00579 HLH 5.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00579 - - vum:124831111 751.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00579 10 5476777 5479997 Vian1g01654 1 18908535 18911803 PCT