Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00578 ATGACTATCACCAACGAAGACCAACAACAAATTCAAATACCTGGCCACAAACATCTCCGTCACAAGAGTCTCCTTCAGAGCGATGCACTCTATCAGTATATACTTGAGACCAGTGTATACCCAAGAGAGCACGAGAGCTTGAAGGAGCTACGCGAGTTGACGGAAAAACACCCTTGGAACCTCTTAGCTACACCACCTGACGAAGGACAACTTCTAAGGATGTTACTGAAGGTGATCAATGCGAAGAACACCATGGAGATTGGCGTCTACACCGGTTACTCCTTGCTTTCCACTGCCCTCGCTCTTCCGTCTGATGGAAAGATCCTGGCAATGGATATTAGCAGGGAATATTATGAACTGGGGTTGCCTGTGATTGAAAAGGCAGGAGTGGCTCACAAGATTGACTTCAGAGAAGGTCCAGCACTTCCTCTTCTTGATCAACTCATCAAAGACGAAAAGAACAAGGGAAGCTTCGATTTCATCTTCGTCGATGCTGATAAGGATAACTACTTGAACTATCACAATAGGGTGATTGAGCTTGTCAAGATTGGGGGAATGATCGCCTACGATAACACCCTGTGGAACGGCTCTGTGGCCGCCCCATCCGATGCTCCTCTCTTGGATTATATTAAGTATTATCGCGATTTTGTGATAGAGCTGAATCAAGCACTTGCACTTGATTCAAGGGTCGAGATTTGCCAGCTTCCCGTTGGTGACGGCATTACACTGTGCCGCCGCATCATCTGA 747 0.4685 MTITNEDQQQIQIPGHKHLRHKSLLQSDALYQYILETSVYPREHESLKELRELTEKHPWNLLATPPDEGQLLRMLLKVINAKNTMEIGVYTGYSLLSTALALPSDGKILAMDISREYYELGLPVIEKAGVAHKIDFREGPALPLLDQLIKDEKNKGSFDFIFVDADKDNYLNYHNRVIELVKIGGMIAYDNTLWNGSVAAPSDAPLLDYIKYYRDFVIELNQALALDSRVEICQLPVGDGITLCRRII 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00578 248 Pfam O-methyltransferase 36 247 IPR002935 GO:0008171
Vian10g00578 248 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 23 247 IPR002935 GO:0008171
Vian10g00578 248 FunFam Caffeoyl-CoA O-methyltransferase 1 16 248 - -
Vian10g00578 248 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 27 246 IPR029063 -
Vian10g00578 248 CDD AdoMet_MTases 86 185 - -
Vian10g00578 248 PANTHER O-METHYLTRANSFERASE-RELATED 20 247 - -
Vian10g00578 248 Gene3D Vaccinia Virus protein VP39 13 248 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00578 Vian-Chr10 5459894 5461039 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00578 6 247 Monolignol Biosynthesis Gene Families AT4G34050 76.033 5.96e-143 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00578 K00588 - gmx:100799303 452.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00578 10 5459894 5461039 Vian1g01649 1 18809485 18810649 ECH
Vian10g00578 10 5459894 5461039 Vian10g00578 10 5459894 5461039 ECH
Vian10g00578 10 5459894 5461039 Vian1g01649 1 18809485 18810649 PCT