Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00575 ATGGCGTCGTCGAAGCCTTCGCCTTCGCCCTCATCTTCCAGATCGGAGCTTATCATCGATCCTTCCGGTGAGAAAGTGGACGCTGTGAGTCAGACTGTTGAAGATGTGTTACCGGTTATTGATTCTTTAAAGAAAGAAGTTGCTGTGGAACGGATTGTTTATGTAAAGAATAGAATAGAGGAAAACAGACAGAAGCTGGTTGGTGTCACAAATCATGTCTGCAAAATGGCAATGGAGAGAAGGAACAGCAGCGTTGCTGATTCTAACAGAAGTCTAGACCTGCTTACAAAGAGGCAAAAAGATGCAATTGATATGCACAACGGTGTTCATGCAAGTAATGGTGATGTAGAGAGCAATGGCTACCATGAAGATACCCATGGTTCTACAGCAGTTCTTCTAGGGTCTAATGTTGCTGTTAAGAATGCTGTTCGTCCTATCAAATTACCTGAAATAAAAAAATTGCCTCCTTATACTACATGGATATTTCTGGATAGAAATCAAAGAATGACCGAGGATCAATCAGTTGTAGGCCGAAGACGAATTTATTATGATCAAAATGGTGGAGAAGCACTTATATGCAGTGACAGTGAGGAAGAAATTATGGAGGATGAAGAGGAGAAAAGAGAATTCATAGAATCAGAAGATTATATACTTCGCATGACTGTCAAAGAATTCGGTTTAACTGACAGCGTTATGGAGTCATTGGCTCAGTGCTTTTCTAGAAACACTAACGAAATTAAGGCAAGGTATGAAGCTCTTAGTATTCAAGACAATGCTGATGGGTCTTCCAAGGCTGTAGATTCTGGAGAGAACTCTCAGAGTGGAAATTCTTTTCTGGAAAAGGATCTTGAAGCGGCTCTTGACTCTTTTGACAACCTCTTTTGTCGACGATGTCTCGTTTTTGATTGTAGATTACATGGATGTTCACAGGATCTTGTCTTCCCAGCTGAGAAGCAACCTATATGGATCCCTCCTGATAGTGAAAATGCACCCTGTGGGCCAAATTGTTTCCGATCGGTGCTTAAGCCAGAAAGATTTGCCAAAACATCTTCTGCCCAGGCTGATGGTGAAGATAAGTGCTCTGGTGGTGTTTTATCTCGGAAAAAGTCTTCTGCCAAAAGGCGGTTAAAAGGAAGCCAAAGTGAAAGTGCTTCATCTAACGCAAAGAACATATCTGAGAGTAGTGACTCAGAGAATGGTCCTGGACGAGATGCTGCTTCAGCATCTCACTCAGCTCCTCCTAAAGCTAAACCCATGGGGAAAGGAATCGGTAAGAGGAACAGTAAGCGAGTGGCAGAACGAGTCTTAGTATGCATGCAGAAAAGGCAGAAGAAACCAGTAGTTTCTGATTCCGATTCCATAAGTGAAGCTCTTGAGCGCTCATCAAATGATATTGTCACTGATCTACATGCTATGAGCAGTGAAGACAACACAAGGAAAGAAGATTCTGTAGATGACAATGTTTGTAAACAAGAAATCACAGACAATAAAGCTTGGAAAGCTCTTGAAAAGGGGCTTTTAGAGAAAGGAATGGAGATTTTTGGTAGAAACAGTTGCTTAATAGCTAGGAATCTCTTAAATGGTCTAAAGACTTGTTGGGATGTTTTCCAATACATAAATTGTGAAGAAGGAAAGATGTCTGGTCCCCCTGGGGATGTTGCAAATTCCCTTTTGGAGGGCTATTCCAAGGGTAATAATGAAGTGAGAAGAAGATCCAGGTTTTTACGCAGAAGAGGAAGAGTCCGTCGATTGAAGTACACATGGAAATCCGCCGCTTATCATTCCATCAGGAAAAGGATTACAGAGAGAAAGGATCAACCCTGCCGGCAGTATAATCCATGCGGTTGCCAATCAGCTTGTGGAAAGCAGTGTCCTTGTCTTCTTAATGGAACCTGCTGTGAGAAGTACTGTGGGTGCCCCAAGAGTTGCAAGAATCGGTTTCGTGGTTGTCATTGTGCTAAGAGTCAATGCCGAAGTCGACAATGTCCATGCTTTGCCGCTGATAGGGAATGTGATCCAGATGTCTGTAGGAATTGTTGGGTCAGTTGTGGCGATGGTACTCTTGGGATTCCTAGCCAAAGAGGGGACAATTACGAATGTAGAAACATGAAGCTTCTTCTCAAACAGCAGCAAAGGGTTCTTCTTGGAAGGTCGGATGTATCAGGCTGGGGAGCCTTCTTAAAGAATAGTGTTGGTAAACATGAATACCTTGGAGAGTATACAGGAGAGTTGATTTCTCATCGGGAAGCAGATAAGCGAGGAAAGATATATGACCGTGAAAATTCATCTTTTCTCTTTAATTTGAATGACCAGTTCGTTCTAGATGCTTACCGAAAGGGTGATAAATTGAAGTTTGCGAACCATTCGCCCGATCCAAATTGCTATGCGAAGGTTATAATGGTTGCTGGAGATCATAGGGTAGGCATTTTTGCAAAGGAACGGATTTGCGCCGGGGAGGAACTGTTCTATGATTATCGTTATGAGCCTGACAGGGCCCCTGTCTGGGCTCGGAAACCTGAGGCATCTGGATCCAAAAAAGAGGACGGGGCTCCTTCAAGTGGTCGTGCAAAGAAGCTTGCTTAA 2583 0.4305 MASSKPSPSPSSSRSELIIDPSGEKVDAVSQTVEDVLPVIDSLKKEVAVERIVYVKNRIEENRQKLVGVTNHVCKMAMERRNSSVADSNRSLDLLTKRQKDAIDMHNGVHASNGDVESNGYHEDTHGSTAVLLGSNVAVKNAVRPIKLPEIKKLPPYTTWIFLDRNQRMTEDQSVVGRRRIYYDQNGGEALICSDSEEEIMEDEEEKREFIESEDYILRMTVKEFGLTDSVMESLAQCFSRNTNEIKARYEALSIQDNADGSSKAVDSGENSQSGNSFLEKDLEAALDSFDNLFCRRCLVFDCRLHGCSQDLVFPAEKQPIWIPPDSENAPCGPNCFRSVLKPERFAKTSSAQADGEDKCSGGVLSRKKSSAKRRLKGSQSESASSNAKNISESSDSENGPGRDAASASHSAPPKAKPMGKGIGKRNSKRVAERVLVCMQKRQKKPVVSDSDSISEALERSSNDIVTDLHAMSSEDNTRKEDSVDDNVCKQEITDNKAWKALEKGLLEKGMEIFGRNSCLIARNLLNGLKTCWDVFQYINCEEGKMSGPPGDVANSLLEGYSKGNNEVRRRSRFLRRRGRVRRLKYTWKSAAYHSIRKRITERKDQPCRQYNPCGCQSACGKQCPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWVSCGDGTLGIPSQRGDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLNDQFVLDAYRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERICAGEELFYDYRYEPDRAPVWARKPEASGSKKEDGAPSSGRAKKLA 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00575 860 SMART set_7 711 832 IPR001214 GO:0005515
Vian10g00575 860 Coils Coil 194 214 - -
Vian10g00575 860 ProSiteProfiles SET domain profile. 711 826 IPR001214 GO:0005515
Vian10g00575 860 MobiDBLite consensus disorder prediction 377 404 - -
Vian10g00575 860 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 860 IPR025778 GO:0031519
Vian10g00575 860 Gene3D SET domain 611 828 IPR046341 -
Vian10g00575 860 MobiDBLite consensus disorder prediction 348 428 - -
Vian10g00575 860 CDD SET_EZH 711 827 - -
Vian10g00575 860 MobiDBLite consensus disorder prediction 836 860 - -
Vian10g00575 860 Pfam SET domain 722 825 IPR001214 GO:0005515
Vian10g00575 860 Pfam CXC domain 649 680 IPR041355 -
Vian10g00575 860 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 31 858 IPR045318 GO:0006338|GO:0042054
Vian10g00575 860 MobiDBLite consensus disorder prediction 836 853 - -
Vian10g00575 860 SMART CXC_2 645 682 IPR033467 -
Vian10g00575 860 SUPERFAMILY SET domain 585 831 IPR046341 -
Vian10g00575 860 MobiDBLite consensus disorder prediction 1 18 - -
Vian10g00575 860 MobiDBLite consensus disorder prediction 1 23 - -
Vian10g00575 860 ProSiteProfiles CXC domain profile. 597 696 IPR026489 -
Vian10g00575 860 FunFam Putative histone-lysine N-methyltransferase EZH2 611 828 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00575 Vian-Chr10 5428983 5443472 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00575 700 829 C2H2 Transcription Factor Family AT2G23740 27.211 1.01e-09 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vian10g00575 SET 8.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00575 - K11430 gmx:100809840 1532.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00575 10 5428983 5443472 Vian10g00575 10 5428983 5443472 ECH