Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00572 ATGTGGGATCTGAATGACTCTCCCGATCAGAGGAAGGACTATGAATCTGAAGGTTGCTCTTCGTTGGATGATGACAAAGGCAGGAGAGTGGGATATGTTTCAAATTCAAGCTCCTCTGCTGTGGTCCTCGACGATGGATTGGAAGAAGAAGACAGTGACAGGGGTGGAAGCAGAACATTGGAGAGAAAAAGTAGTAAAATATTCGGCTTTTCAGTTACACACAATGACAGTGACCACCCGCCCGTCACCCAGCAGTTTTTTTCGGTGGAGGATTCTGACCTTCCTGTCTCTGAAGCAGCCCCCACCGACTGCGGGGGAAGCTCCTTCCCTCGAGCTCACTGGGTAGGTGTAAAATTCCGTCAATCGGAAACTCTTGGCCCCGGAAAATCAGTGAAAATGTCGGAGCCTATAAAGAAAAGTCGGCGAGGACCACGGTCACGAAGCTCACAGTATCGCGGAGTTACCTTTTACAGAAGAACTGGTAGATGGGAGTCTCATATATGGGATTGTGGAAAGCAAGTGTATTTGGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCTTATGATAGAGCGGCCATTAAGTTCCGGGGAGTGGAGGCAGATATCAATTTCAACATAGAAGACTACGAAGAAGACTTGAAGCAGATGAACAATTTAACGAAAGAAGAGTTTGTGCACGTACTTCGCCGACAAAGCACTGGATTTCCGAGAGGAAGCTCCAAATATAGAGGCGTAACTTTGCACAAGTGTGGAAGATGGGAGGCTCGAATGGCCCAATTTTTGGGAAAAAAGTACGTTTATCTGGGTCTGTTTGACACCGAGATTGAAGCTGCAAGGGCATACGACAAAGCGGCAATTAAATGCAACGGCAAAGAGGCCGTCACCAATTTTGATCCCAGCATATATGATAATGAACTTAATTCTGATTCCTCAGGTGTAGCTGCTGATCACAATCTTGATTTGAGTTTGGGCAATTTGAGCTCTAGACGTGGCAATGGTCAAATATCGGGGAATCACTTCCCAAATTCTGCGTCCGATCAGCACCTGCCATCTGCATCTAATTGGCAGAATGGAGGAACAAAGCCTAAGCTTGTAAATATACTACCAAAACCATGTGATAGGAGCAACATGGAAACCTATGCAAGAGATTGGCTTGGGGAGAGTGAAACCTTGAGACTGCTAAACCAAACTCACCTTCAATCTCCAACGACTAAAGAAATGCATAGATATGGTCCGTATAGGTCACCAGCCGAGCCTCAACTGTCTCACAGTTTTGCAATTCTTCACCCACCAAATTTTCATGTTCCCAGCAGCAGCAGCAACGGAGGCCGTATTGGAAGCGATCTTTCGTTATCAATGTCTGATCAACAGCAATGGCAAGCCGGGCATCCACATTTGTTAGCAACTGCTGCAGCATCATCAGGATTCCCACCTCAGATTAGACCCTCCCTAAGTTGGTAG 1464 0.4665 MWDLNDSPDQRKDYESEGCSSLDDDKGRRVGYVSNSSSSAVVLDDGLEEEDSDRGGSRTLERKSSKIFGFSVTHNDSDHPPVTQQFFSVEDSDLPVSEAAPTDCGGSSFPRAHWVGVKFRQSETLGPGKSVKMSEPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMNNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMAQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYDNELNSDSSGVAADHNLDLSLGNLSSRRGNGQISGNHFPNSASDQHLPSASNWQNGGTKPKLVNILPKPCDRSNMETYARDWLGESETLRLLNQTHLQSPTTKEMHRYGPYRSPAEPQLSHSFAILHPPNFHVPSSSSNGGRIGSDLSLSMSDQQQWQAGHPHLLATAAASSGFPPQIRPSLSW 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00572 487 SMART rav1_2 150 212 IPR001471 GO:0003700|GO:0006355
Vian10g00572 487 SMART rav1_2 242 305 IPR001471 GO:0003700|GO:0006355
Vian10g00572 487 ProSiteProfiles AP2/ERF domain profile. 242 299 IPR001471 GO:0003700|GO:0006355
Vian10g00572 487 SUPERFAMILY DNA-binding domain 241 301 IPR016177 GO:0003677
Vian10g00572 487 MobiDBLite consensus disorder prediction 433 458 - -
Vian10g00572 487 Gene3D AP2/ERF domain 241 300 IPR036955 GO:0003700|GO:0006355
Vian10g00572 487 Gene3D AP2/ERF domain 149 208 IPR036955 GO:0003700|GO:0006355
Vian10g00572 487 Pfam AP2 domain 150 198 IPR001471 GO:0003700|GO:0006355
Vian10g00572 487 Pfam AP2 domain 241 290 IPR001471 GO:0003700|GO:0006355
Vian10g00572 487 FunFam AP2-like ethylene-responsive transcription factor 149 208 - -
Vian10g00572 487 SUPERFAMILY DNA-binding domain 149 207 IPR016177 GO:0003677
Vian10g00572 487 MobiDBLite consensus disorder prediction 334 361 - -
Vian10g00572 487 MobiDBLite consensus disorder prediction 434 458 - -
Vian10g00572 487 ProSiteProfiles AP2/ERF domain profile. 150 206 IPR001471 GO:0003700|GO:0006355
Vian10g00572 487 Coils Coil 200 220 - -
Vian10g00572 487 CDD AP2 150 207 IPR001471 GO:0003700|GO:0006355
Vian10g00572 487 MobiDBLite consensus disorder prediction 125 150 - -
Vian10g00572 487 CDD AP2 241 301 IPR001471 GO:0003700|GO:0006355
Vian10g00572 487 PRINTS Ethylene responsive element binding protein signature 281 301 IPR001471 GO:0003700|GO:0006355
Vian10g00572 487 PRINTS Ethylene responsive element binding protein signature 243 254 IPR001471 GO:0003700|GO:0006355
Vian10g00572 487 MobiDBLite consensus disorder prediction 1 60 - -
Vian10g00572 487 MobiDBLite consensus disorder prediction 1 30 - -
Vian10g00572 487 FunFam AP2-like ethylene-responsive transcription factor 241 301 - -
Vian10g00572 487 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 75 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00572 Vian-Chr10 5394512 5397158 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00572 1 335 AP2-EREBP Transcription Factor Family AT4G36920 66.102 1.91e-127 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vian10g00572 AP2 4.7e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00572 K09284 - gmx:100786333 817.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00572 10 5394512 5397158 Vian10g00572 10 5394512 5397158 ECH
Vian10g00572 10 5394512 5397158 Vian1g01642 1 18703885 18706696 PCT