Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00570 ATGGAGGAAGACAACTATGTGAAGAGGGAATACGGAAATAAAATTGGAGGAAGAGGACTTTATTTTCATTCCTCATGGACCAGATTCCCTCTCTCTCTCTCTGATCTCATTTCAACCACACCAACCCAAGAACACAAAGCAACACAAGAGAAGAGAGAGATGGAACTTCAAGGAAGAACACAAGGAGGAGAGAGAGAACCCACAAGCAAGCGAAGCGGCGTGGCGGTGGCGGTGGCGGTGGAGGGAGAGAGAAAATACAAAGGAATAAGGATGAGGAAGTGGGGCAAGTGGGTCGCGGAAATTAGGGAACCCAACAAGCGTTCCAGGATTTGGCTCGGTTCCTATTCCACCCCTGTCGCCGCCGCACGTGCTTACGACACAGCCGTATTTTACCTCAGGGGACCCTCCGCGCGGCTCAACTTCCCCGACCTTCTTGTTGGAGAGGGCGCCGCCCTTGTAGCCGGTTGCGACATGTCAGCTGCCTCTATTAGGAAGAAGGCCATCGAGGTCGGTGCCAGAGTTGATGCTCTCCAAGCATCGCTCCACCACCACCACGTGGCGCCGCCGCTGCCGGAGCTTCTCTCCCGCGGCGACGGAGGTGGGTCCGGGGATTTCGCGGTTGACCTGAACAAGATGCCCGAACCCGAGAGTGAGGACTGCAAATGGGATGTGAATTGA 678 0.5516 MEEDNYVKREYGNKIGGRGLYFHSSWTRFPLSLSDLISTTPTQEHKATQEKREMELQGRTQGGEREPTSKRSGVAVAVAVEGERKYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPDLLVGEGAALVAGCDMSAASIRKKAIEVGARVDALQASLHHHHVAPPLPELLSRGDGGGSGDFAVDLNKMPEPESEDCKWDVN 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00570 225 Gene3D AP2/ERF domain 84 143 IPR036955 GO:0003700|GO:0006355
Vian10g00570 225 MobiDBLite consensus disorder prediction 45 66 - -
Vian10g00570 225 MobiDBLite consensus disorder prediction 40 73 - -
Vian10g00570 225 ProSiteProfiles AP2/ERF domain profile. 85 142 IPR001471 GO:0003700|GO:0006355
Vian10g00570 225 SUPERFAMILY DNA-binding domain 85 143 IPR016177 GO:0003677
Vian10g00570 225 PRINTS Ethylene responsive element binding protein signature 124 144 IPR001471 GO:0003700|GO:0006355
Vian10g00570 225 PRINTS Ethylene responsive element binding protein signature 86 97 IPR001471 GO:0003700|GO:0006355
Vian10g00570 225 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 53 219 - -
Vian10g00570 225 MobiDBLite consensus disorder prediction 204 225 - -
Vian10g00570 225 SMART rav1_2 85 148 IPR001471 GO:0003700|GO:0006355
Vian10g00570 225 CDD AP2 85 144 IPR001471 GO:0003700|GO:0006355
Vian10g00570 225 Pfam AP2 domain 85 134 IPR001471 GO:0003700|GO:0006355
Vian10g00570 225 MobiDBLite consensus disorder prediction 211 225 - -
Vian10g00570 225 FunFam Ethylene-responsive transcription factor 2 84 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00570 Vian-Chr10 5368462 5375854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00570 76 219 AP2-EREBP Transcription Factor Family AT3G50260 62.500 1.54e-53 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian10g00570 AP2 1e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00570 K09286 - gmx:100527066 258.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00570 10 5368462 5375854 Vian10g00570 10 5368462 5375854 ECH
Vian10g00570 10 5368462 5375854 Vian1g01641 1 18662554 18662994 PCT