Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00569 ATGGACGACATGGCTGCCTACTACTCACAGCCCCAACCGGCGGGCCTTCTCACTTACCACCAGTACTATCAACCGCCGCCTCCGCAACCTCCTCCGTTGTTGGCGGTGGTACCACCGCCACCCGGCGCGGTTGTCCCTTCGGCGCACCACGGGCATCCGCCATACGTGGCTCAGCATCAGCAGCAAGCGGTGTTCGGTTCTTATGGCGCTCCTCAACCCTCCACGAACGAGGTTCGCACCCTCTTCGTCGCTGGCCTTCCTGAAGATGTAAAGCCCCGCGAAATCTACAATCTTTTCCGCGAATTTCCCGGCTACGAGTCTTCACATCTCCGGAGTCCCAGCAATTCGTCTCAGCCTTTTGCTTTTGCTGTGTTCGCCAGTCAGCAGTCAGCAATCATGGCAATGCATGCTCTGAATGGCATGGTGTTTGATCTTGAAAAGGGCTCCACTCTTTTTATTGATCTGGCAAAATCAAACTCTAGATCCAAACGCACTAGGATAGACGATGAGAGAACCGGTGCCGATAAGAAAGCTAGAAGTCTTGCATCATCATGGGTCACTCCCGATTCTGGTGTTAGCAGCATTCACATGCCTGGAATGGGTAATCCTGCTTTCAACACGAACACGTTTGGTTATCCATCTGCACAAAGTCTTGGGAGTGCTGATGGGAATGCTGTGAGTGATGGTCGATACCTGAATATGAAGAAGTCTTCATCTCCTTACATTCCTCAAAACTCAACCCCGTGTGCAACTTTATTTGTAGCAAATCTGGGGCCATCTTGTAATGAACAAGAGCTAATGCAAGTGTTTTCTAGATACCATGGATTTTTGAAGCTGAAGATGCAGAGCACATACGGGGCGCCAGTAGCATTTGTTGATTTCCAGGATGCCACTAGCTCAACTGAAGCTCTAAACAGTTTGCAAGGCACAATTCTTCACTCTTCGCAAACTGGCGAGGGAATGCGTTTAGAGTATCCTTTGGTCACCTGCGCTTTTAATCTTAGATATGCAAAATCGCGGATGGGCATGCGAAAGAAGCCAAAGTAA 1047 0.4986 MDDMAAYYSQPQPAGLLTYHQYYQPPPPQPPPLLAVVPPPPGAVVPSAHHGHPPYVAQHQQQAVFGSYGAPQPSTNEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSPSNSSQPFAFAVFASQQSAIMAMHALNGMVFDLEKGSTLFIDLAKSNSRSKRTRIDDERTGADKKARSLASSWVTPDSGVSSIHMPGMGNPAFNTNTFGYPSAQSLGSADGNAVSDGRYLNMKKSSSPYIPQNSTPCATLFVANLGPSCNEQELMQVFSRYHGFLKLKMQSTYGAPVAFVDFQDATSSTEALNSLQGTILHSSQTGEGMRLEYPLVTCAFNLRYAKSRMGMRKKPK 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00569 348 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 224 325 - -
Vian10g00569 348 Gene3D - 242 326 IPR012677 -
Vian10g00569 348 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 250 328 IPR000504 GO:0003723
Vian10g00569 348 SUPERFAMILY RNA-binding domain, RBD 78 314 IPR035979 GO:0003676
Vian10g00569 348 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 79 158 IPR000504 GO:0003723
Vian10g00569 348 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 144 IPR000504 GO:0003723
Vian10g00569 348 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 252 315 IPR000504 GO:0003723
Vian10g00569 348 SMART rrm1_1 80 154 IPR000504 GO:0003723
Vian10g00569 348 SMART rrm1_1 251 324 IPR000504 GO:0003723
Vian10g00569 348 Gene3D - 75 168 IPR012677 -
Vian10g00569 348 FunFam RNA-binding protein with multiple splicing 242 344 - -
Vian10g00569 348 FunFam RNA-binding protein with multiple splicing 2 76 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00569 Vian-Chr10 5353165 5356590 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00569 81 312 Eukaryotic Initiation Factors Gene Family AT3G16380 24.335 1.98e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00569 - - gmx:100780983 551.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00569 10 5353165 5356590 Vian10g00569 10 5353165 5356590 ECH