Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00564 ATGCCTGTGGAGCTCATGATGGGTTATAGGAACGATGGTTTCGCCGAAGAGAATGCGGTTCGAGAAGCCGCGTCAGGGCTAGAGAGCGTGGAGAAGCTCATCAGGTTGCTGTCACACGCTCAGCTGCAACAACAACACCAACAACTTCAACAACAATCGCACGCGACCAATTCAAAGTCTTCCATGGAAATTGAATCCGATTACGGAGCTGTCGCTGACGTGGCGGTTTCCAAGTTCAAGAAGGTCATTTCGCTTCTGGGCCGAACCAGAACCGGTCACGCGCGTTTCAGAAGAGCCCCTGTGCCTCCTCCACCTCCTTCCGAACCCAGATTCTACCGCGCAACGCCGCTGCAGCAGATCCCGCCGCCCACCGAACACCCTTTCATCCCAAAAAATGGTCCGATTGAGACAAAGGACTCTTCCAAGACCATCAACTTCTCTTATTCTAATTCCTTCGTCTCCTCCCTCACCGGCGACACCGACACCAAACAGCCCTCTTCCTCGTCGCCTGCGGCCGCAACGCCTTTTCAGATCACGAATCTCTCTCAGGTCTCCTCCGCCGGAAAGCCTCCTATTTCTTCGTCTTCGTTGAAGAGGAAGTGCAGCTCTGATAATTTGGGTTCTGCCAAGTGTGGCAGTTCCTCCAGCCGATGCCATTGCTCAAAGAAGAGTAGAAAAATGAGGATGAAGAGGGTGGTGAGGGTACCCGCAATAAGTTTGAAGATGGCTGATATTCCACCGGATGATTATTCTTGGAGGAAATACGGACAGAAACCGATTAAAGGATCTCCTCATCCAAGGGGCTATTACAAGTGCAGCAGTGTTAGAGGGTGTCCAGCGCGCAAGCATGTAGAGAGGGCTCTGGATGACCCTTCTATGTTGGTAGTAACCTACGAAGGTGAACACAATCACACACTCTCTGCAGTCGAAGCTACTACTAATCTTATCCTAGAATCTTCTTAG 963 0.513 MPVELMMGYRNDGFAEENAVREAASGLESVEKLIRLLSHAQLQQQHQQLQQQSHATNSKSSMEIESDYGAVADVAVSKFKKVISLLGRTRTGHARFRRAPVPPPPPSEPRFYRATPLQQIPPPTEHPFIPKNGPIETKDSSKTINFSYSNSFVSSLTGDTDTKQPSSSSPAAATPFQITNLSQVSSAGKPPISSSSLKRKCSSDNLGSAKCGSSSSRCHCSKKSRKMRMKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHTLSAVEATTNLILESS 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00564 320 MobiDBLite consensus disorder prediction 182 218 - -
Vian10g00564 320 Pfam Plant zinc cluster domain 198 244 IPR018872 -
Vian10g00564 320 Pfam WRKY DNA -binding domain 248 304 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian10g00564 320 SUPERFAMILY WRKY DNA-binding domain 243 306 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian10g00564 320 FunFam WRKY transcription factor 65 230 307 - -
Vian10g00564 320 Coils Coil 39 59 - -
Vian10g00564 320 Gene3D WRKY domain 232 307 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian10g00564 320 MobiDBLite consensus disorder prediction 117 141 - -
Vian10g00564 320 ProSiteProfiles WRKY domain profile. 241 307 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian10g00564 320 MobiDBLite consensus disorder prediction 182 225 - -
Vian10g00564 320 SMART WRKY_cls 246 306 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian10g00564 320 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 21 312 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00564 Vian-Chr10 5309795 5311141 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00564 1 310 WRKY Transcription Factor Family AT2G24570 45.294 3.88e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vian10g00564 WRKY 3.2e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00564 - - gmx:100804089 456.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00564 10 5309795 5311141 Vian10g00564 10 5309795 5311141 ECH
Vian10g00564 10 5309795 5311141 Vian1g00583 1 5601578 5602793 PCT