Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00560 ATGGAACCAGCTTCTGCTTATTCTTCATCTCAACCTACTCCTCCAGTTTCTAGTGCTGAAGAACAACACTCAACCAAAGTAACAGGACAGATCAACAATGCACATGATTCACCATCAACGTTATCTGCTTCTGGCATGTCATTATGGACAAAACATCTGAAATTTCCAGGCCTTGGCCTTGGACAAGCACAACAGGATTCACAGACCGATAACACAGGCATATCAGCTTTTGCTCGCCTGACTGGTGGGCTTGGATTGCGAACGCAGTCAAAAGAAACTGCTGCTCCAGTCAATTCGGGACCTGATCAATCTAATTTAATTGAATCCTTCGCCAAAGGGTTGATGGACTCTTCCAAGAGTGCAGTAAAAGCTGTCCAGGTCAAAGCACGCCATATCGTCTCTCAGAATAAACGTAGATACCAGGAAGATGGATTTGATTTGGATATGACATACATCACTGAAAATATAATTGCTATGGGATTTCCGGGTGGTGATATTAGCTCTGGAATTGTTGGATACATTGAGGGGTTCTATCGCAATCACATGGAAGAAGTGATCAAGTTTTTTGAAACACATCATAAGGGTAAATACAAAGTATACAATCTTTGTTCAGAAAGGTTATATGATGGATCATTATTCCAGGGGAAGGTTGCAACTTTCCCATTTAGTGATCATAATTGCCCCCCTATTCAACTTATAGCATCATTCTGTCAAAGTGCATATTCATGGTTGAAGGAGGATATTCAAAATGTGGTGGTTGTTCATTGTAAAGCTGGTATGGGGAGGACTGGACTGATGATATGTTGTCTTCTTTTGTCTCTTAAGTTCTTCCCAACTGCAGAGGAAGCTATTGATTACTTTAACCATAAAAGATGTGTAGATGGAAAGGCTCTAGTCCTCCCTAGTCAAATAAGATATGTAAAATACTTTGAACGGACTTTAACACAATTCAATGGAGAAGTCCAGCCCGGTCGAAGGTGCTTACTAAGAGGGTTCCGGCTTCACAAGTGCCCTTATTGGGTTAGACCATCTATTACAATTTCTGATCATAAGGGAGTTTTGTTTGCCACAAGAAACCATCCCAAAACAAAAGATCTACTGCCAGAAGATTTCTGGATCAGTCCACCGAAGAAAGGAATTGTGGTTTTTGCTCTACCAGGAGAACCTGGTCTAGCAGAGTTGGTAGGAGACTTCAAACTTCATTTTAATGATAGACAAGGAGATTTCTACTGTTGGATGAATACAACAATGACAGAAAATCGAATAATTTTAGATGGTTCAGATTTTGATGGTTTCGACAAGAGGAAGATCCCCGCTCCAGGATTCCGGGTGGAAGTTGTCATGATAGACTATAATGGCACCCTACCTTCAAGGACAAAAGCAAATTCCGCCAGCAAAGGATCTGACCAAAACACAATCAATGCCCTACCTGGTCCAAAGCCTACTACATCTAATTCAACTGAGAGTAAACTCCCGAGAAATGAAGATGATGTATTCTCAGACAGTGATGAAGAGGAGGGCCGAGATACACAAAGCAAGAAAGCTGCAACTGAGTACAAATTTATGGCACCTCATCAAGCTTCTGAGGAGACAACAGACCACGTAGGGATGTTGAGACACTCAACTGATCGATTGTCACTAAAGCATGAGGCAGGCATGCAGAACAATACTTCTGAACAATCAACTGCAGATGAACATAATAAAATTCATACAGGCAATAGCAGCACAAACGTGGAATCTGTAGGGGCAAGTGACATCAAGGCAATTGCAGCAGATGCTTCAGTTTTTTCCTTTGGGGATGAAGACTTTGAAAGTGATTGA 1821 0.4146 MEPASAYSSSQPTPPVSSAEEQHSTKVTGQINNAHDSPSTLSASGMSLWTKHLKFPGLGLGQAQQDSQTDNTGISAFARLTGGLGLRTQSKETAAPVNSGPDQSNLIESFAKGLMDSSKSAVKAVQVKARHIVSQNKRRYQEDGFDLDMTYITENIIAMGFPGGDISSGIVGYIEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDGSLFQGKVATFPFSDHNCPPIQLIASFCQSAYSWLKEDIQNVVVVHCKAGMGRTGLMICCLLLSLKFFPTAEEAIDYFNHKRCVDGKALVLPSQIRYVKYFERTLTQFNGEVQPGRRCLLRGFRLHKCPYWVRPSITISDHKGVLFATRNHPKTKDLLPEDFWISPPKKGIVVFALPGEPGLAELVGDFKLHFNDRQGDFYCWMNTTMTENRIILDGSDFDGFDKRKIPAPGFRVEVVMIDYNGTLPSRTKANSASKGSDQNTINALPGPKPTTSNSTESKLPRNEDDVFSDSDEEEGRDTQSKKAATEYKFMAPHQASEETTDHVGMLRHSTDRLSLKHEAGMQNNTSEQSTADEHNKIHTGNSSTNVESVGASDIKAIAADASVFSFGDEDFESD 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00560 606 MobiDBLite consensus disorder prediction 457 489 - -
Vian10g00560 606 MobiDBLite consensus disorder prediction 554 579 - -
Vian10g00560 606 ProSiteProfiles Phosphatase tensin-type domain profile. 138 317 IPR029023 -
Vian10g00560 606 ProSiteProfiles C2 tensin-type domain profile. 324 451 IPR014020 -
Vian10g00560 606 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 252 291 IPR000387 GO:0016311|GO:0016791
Vian10g00560 606 MobiDBLite consensus disorder prediction 457 514 - -
Vian10g00560 606 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 151 316 IPR029021 -
Vian10g00560 606 CDD PTP_PTEN 148 312 IPR045101 GO:0016791
Vian10g00560 606 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 123 320 - -
Vian10g00560 606 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 116 567 - -
Vian10g00560 606 ProSitePatterns Tyrosine specific protein phosphatases active site. 254 264 IPR016130 GO:0016311|GO:0016791
Vian10g00560 606 SMART PTEN_C2_2 322 450 IPR014020 -
Vian10g00560 606 MobiDBLite consensus disorder prediction 1 43 - -
Vian10g00560 606 Gene3D Protein tyrosine phosphatase superfamily 123 320 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00560 Vian-Chr10 5269228 5278574 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00560 36 606 Protein tyrosine phosphatase (PTP) family AT3G19420 60.169 0.0 726
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00560 K01110 - gmx:100801622 1025.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00560 10 5269228 5278574 Vian10g00560 10 5269228 5278574 ECH
Vian10g00560 10 5269228 5278574 Vian3g00354 3 3415608 3422387 PCT