Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00546 ATGCCTCCACAAGACCACCACCAGCCGCTGTTAGCGGAGGAGCAGGAAGAGACTGCGTACGATTCCGCGGACAAGGTCGTGGTGGTCGGAATCGACGAGCAGGACGGTGACGAGGCGCTGCCGTTCTCATGGCGGAAGCTGTGGCTGTTCACGGGGCCGGGGTTTCTGATGAGCATCGCGTTTCTGGATCCCGGGAATCTGGAGGGGGATCTTCAGTCTGGTGCCATTGCTGGGTACTCCCTCTTGTGGCTCCTCATGTGGGCCACTGCTATGGGCCTCCTTATTCAGCTTCTCTCGGCCCGCCTTGGCGTCGCCACTGGGAGACACTTAGCTGAACTGTGCAGGGAAGAGTATCCTGCATGGGCTAGGATTGTGCTCTGGCTTATGACTGAAATCGCTCTTATTGGCTCTGACATTCAGGAGGTTATCGGGAGCGCTATTGCTATCAAGATTCTCAGTAATGGCGTCGTTCCCCTTTGGGCTGGGGTCGTAGTTACAGCTTTAGATTGTTTCATTTTTCTCTTTCTTGAGAACTATGGTGTGAGGAAACTGGAGGCGTTTTTCGCTGTTCTGATTGCTGTAATGGCTCTGTCGTTTGCGTGGATGTTTGGTGAAGCAAAGCCCAATGGTGTTGATGTTCTTGTTGGTATTTTGGTTCCTAAACTTAGCTCCAGAACTATACAACAAGCTGTTGGAGTTGTGGGTTGCATTATTATGCCTCACAATGTGTTTTTGCATTCTGCGCTTGTTCAATCTAGGCAGGTTGACCCCAGCAAGAAAGGCCGTGTTCAGGAAGCTCTTAATTACTACTCGATAGAGTCCACCATCGCCCTGGCGGTGTCCTTTGTGATTAATATATTTGTTACAACTGTGTTTGCCAAGGGCTTTTATGGTACTGAAATAGCAAACAACATTGGTCTTGTAAACGCAGGTCAGTACCTTCAGGAGAAGTACGGGGGTGGACTTTTCCCCATCATGTATATATGGGGTATTGGGTTGTTAGCAGCCGGCCAGAGTAGCACAATTACTGGTACATATGCGGGACAATTTATCATGGGGGGTTTTCTGAATTTAAGGTTGAAAAAGTGGGTGAGGGCATTGATTACTCGAAGTTTTGCAATCATCCCAACAATGATAGTTGCTCTTATATTCGATACCTCGGAGGAGTCATTAGATGTTCTGAACGAATGGCTTAATGTTCTCCAATCAGTTCAAATCCCATTTGCACTCATTCCCTTGCTTTGCTTAGTGTCCAAAGAACAGATAATGGGCAGTTTCAGAATTGGCCCTGTCCTTAAGATTATTTCCTGGCTTGTGGCTGCTCTGGTGATAGTGATAAACGGCTATCTTTTGGTGGAATTCTTCTCCTCTGAAGTGAATGGAGCAGTGTTTGCAGCTATAGTGTTTGTATTAACAGCTGCATATGTTGCATTCGTACTTTACCTTATTTCACGAGCCATTACCTATACACCATGGCAACGTTTAACCGGATCTAAGACAGTTGCTACCGCAGAGAATTGA 1521 0.474 MPPQDHHQPLLAEEQEETAYDSADKVVVVGIDEQDGDEALPFSWRKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATAMGLLIQLLSARLGVATGRHLAELCREEYPAWARIVLWLMTEIALIGSDIQEVIGSAIAIKILSNGVVPLWAGVVVTALDCFIFLFLENYGVRKLEAFFAVLIAVMALSFAWMFGEAKPNGVDVLVGILVPKLSSRTIQQAVGVVGCIIMPHNVFLHSALVQSRQVDPSKKGRVQEALNYYSIESTIALAVSFVINIFVTTVFAKGFYGTEIANNIGLVNAGQYLQEKYGGGLFPIMYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWVRALITRSFAIIPTMIVALIFDTSEESLDVLNEWLNVLQSVQIPFALIPLLCLVSKEQIMGSFRIGPVLKIISWLVAALVIVINGYLLVEFFSSEVNGAVFAAIVFVLTAAYVAFVLYLISRAITYTPWQRLTGSKTVATAEN 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00546 506 PRINTS Natural resistance-associated macrophage protein signature 399 418 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vian10g00546 506 PRINTS Natural resistance-associated macrophage protein signature 365 382 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vian10g00546 506 PRINTS Natural resistance-associated macrophage protein signature 181 202 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vian10g00546 506 PRINTS Natural resistance-associated macrophage protein signature 337 356 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vian10g00546 506 PRINTS Natural resistance-associated macrophage protein signature 230 253 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vian10g00546 506 PRINTS Natural resistance-associated macrophage protein signature 156 175 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vian10g00546 506 PRINTS Natural resistance-associated macrophage protein signature 126 152 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vian10g00546 506 NCBIfam Nramp family divalent metal transporter 52 421 - -
Vian10g00546 506 Hamap Divalent metal cation transporter MntH [mntH]. 34 455 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vian10g00546 506 Pfam Natural resistance-associated macrophage protein 68 429 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vian10g00546 506 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 38 484 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vian10g00546 506 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 45 423 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00546 Vian-Chr10 5145229 5148350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00546 1 492 Inorganic Solute Cotransporters AT2G23150 77.844 0.0 792
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00546 K21398 - gmx:100807811 937.947
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00546 10 5145229 5148350 Vian10g00546 10 5145229 5148350 ECH