Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00539 ATGTTGGAGTGGTGCCTGAGGCCACTGGAGATGTGTTTTGGTGGTGGAGGCAGCGACCAAAGCCTTCTCTGGGACACTGACCTTAAGCCACACGCTTCAGGGAACTACTCAATTGCAGTAGTACAAGCCAACTCCTCCTTGGAAGACCAAGCACAAGTCTTCACCTCTCCCTCCGCAACCTTTCTTGGCGTCTACGACGGCCACGGCGGACCACAAGCTTCCCGTTTCATCACCAATAATCTCTTCTCCTTCCTCCTCAAATTCACAGAAGAGGAAGGTGGGTTGTCTGAGGAGGTGATAAAGAAGGCGTTCGCGGCAACAGAGGAGGAGTTTTTGCGTTTTGTGAAACAAACATGGATTGCGCGGCCACAGATGGCTTCAGTGGGTTCGTGCTGTCTTCTGGGAGCGATTTCAAAGGACGTTCTTTATGTTGCTAATCTGGGGGATTCAAGGGCGGTTCTGGGTCGGAGAGCGTTGGTAGGAGAGGTGAATTGCGGTGGTGTGGTGGCGGAGCGTTTGTCCACTGATCATAATGTTGGAGTGGAGGAGGTCAGAAAGGAGGTGGAAGCTCTTCACCCTGATGATGCACACATTGTGGTCTGCACTCGTGGAGTTTGGCGAATCAAGGGCATTATTCAGGTATCAAGATCAATTGGAGATGCTTACTTAAAGAAAGCAAATTTTGACGCAAACCCTTTGTTCCAACAATTTGCATGTCCATTGTACTTGAAGAGACCTGTAATGACAGCCGAACCATCAATACTGATGCGGAAATTGAAGGAAAATGATCTGTTTTTAGTCTTTGCATCAGATGGACTTTGGGAGAATTTAACTGATGAAGAGGTTGTTCAAATTGTCTCAGAAAATCCCAGAACAGGAATAGCAAAACGAGTGGTGACAGTTGCACTAGAAGAGGCAGCAAAGAAGAGAGATATGAGGTATGATGACTTAAAGAAAGTTGAGAAAGGTCTGAGGCGTCATTTTCATGATGATATCACAGTGATCGTTCTATATCTCGATCATTTGAAAGAATCTATAAATGGTAGGTCAAGACATAAAGGAGATTATGGCTGCATTAATACTCCCATTGATATCTTCTCTCAAAGTGCAAACGAAATTGATCTTTAA 1128 0.4566 MLEWCLRPLEMCFGGGGSDQSLLWDTDLKPHASGNYSIAVVQANSSLEDQAQVFTSPSATFLGVYDGHGGPQASRFITNNLFSFLLKFTEEEGGLSEEVIKKAFAATEEEFLRFVKQTWIARPQMASVGSCCLLGAISKDVLYVANLGDSRAVLGRRALVGEVNCGGVVAERLSTDHNVGVEEVRKEVEALHPDDAHIVVCTRGVWRIKGIIQVSRSIGDAYLKKANFDANPLFQQFACPLYLKRPVMTAEPSILMRKLKENDLFLVFASDGLWENLTDEEVVQIVSENPRTGIAKRVVTVALEEAAKKRDMRYDDLKKVEKGLRRHFHDDITVIVLYLDHLKESINGRSRHKGDYGCINTPIDIFSQSANEIDL 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00539 375 CDD PP2Cc 42 339 IPR001932 -
Vian10g00539 375 ProSiteProfiles PPM-type phosphatase domain profile. 35 339 IPR001932 -
Vian10g00539 375 PANTHER PROTEIN PHOSPHATASE 36 337 IPR015655 GO:0004722|GO:0006470
Vian10g00539 375 Pfam Protein phosphatase 2C 57 308 IPR001932 -
Vian10g00539 375 Gene3D - 25 347 IPR036457 -
Vian10g00539 375 SUPERFAMILY PP2C-like 40 342 IPR036457 -
Vian10g00539 375 SMART PP2C_4 28 337 IPR001932 -
Vian10g00539 375 ProSitePatterns PPM-type phosphatase domain signature. 61 69 IPR000222 GO:0043169
Vian10g00539 375 FunFam Probable protein phosphatase 2C 42 26 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00539 Vian-Chr10 5074855 5077309 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00539 17 340 PP2C-type Phosphatase Gene Family AT3G51370 52.711 3.57e-131 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00539 - K01102 gmx:100802394 630.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00539 10 5074855 5077309 Vian10g00539 10 5074855 5077309 ECH
Vian10g00539 10 5074855 5077309 Vian3g00399 3 3778054 3780478 PCT