Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00523 ATGAGTTGCAACGGTTGCCGCGTCCTTCGAAAGGGTTGCAGCGAGTCTTGTATCCTGCGGCCGTGTCTACAGTGGATCGATACTCCCGAGGCCCAAGGTCATGCCACTGTCTTTGTTGCCAAATTCTTCGGTCGTGCTGACCTCATGTCTTTCATTTCCAACGTCCCTGAGGCCCAAAGGCCCGCTCTGTTTCAGTCTCTGCTGTTTGAAGCTTGCGGACGAACGGTGAATCCCGTCAACGGTGCCGTTGGCCTTTTATGGACTGGAAATTGGCACGTGTGCCAGGCGGCGGTTGAGACGGTGCTGCGTGGCGGTACTGTCAGGCCGGTGCCGGAGCTTCTTGGCCTTGACGCTCCCACTCCTGACGACGCCTCCGAAGGTGAAGTTACCTGTAACGACAAATGGAGGGTCCGAGATCCGAACCCGAGTTTCCGGTTGCCTGGTTCGATGTCCGATAAGGCTGCTTCTGGTGGTAAACGCAAGCGATTGGAAGAGCTTGCAAAGCTGCAGACGGCCACCACTGATCTCAATCTCCGTTTGACACCGAGTTTCCTGCAGAACGCGGCGAGCTTCGGTTGCCGACAGGAAATTCGATGGCCGAGATCGCCGTCGATCAACTCGGAGGAGTCCGGGACCACTACGGCGGCTTGCTTGGAAGGCGGGATCGGAGATCACTACGCTCCCGACGGAGGCCGGAAAGTGTTAAACCTCTTCATTTGA 720 0.5708 MSCNGCRVLRKGCSESCILRPCLQWIDTPEAQGHATVFVAKFFGRADLMSFISNVPEAQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTVRPVPELLGLDAPTPDDASEGEVTCNDKWRVRDPNPSFRLPGSMSDKAASGGKRKRLEELAKLQTATTDLNLRLTPSFLQNAASFGCRQEIRWPRSPSINSEESGTTTAACLEGGIGDHYAPDGGRKVLNLFI 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00523 239 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Vian10g00523 239 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 207 - -
Vian10g00523 239 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00523 Vian-Chr10 4936050 4936855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00523 1 238 AS2 family AT3G49940 54.615 3.00e-81 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vian10g00523 LOB 3.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00523 - - gmx:100802764 459.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00523 10 4936050 4936855 Vian1g01586 1 17900359 17902237 ECH
Vian10g00523 10 4936050 4936855 Vian10g00523 10 4936050 4936855 ECH
Vian1g01586 1 17900359 17902237 Vian10g00523 10 4936050 4936855 PCT