Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00519 ATGAAAGCTCCTCACTTGAGCTTCTTCTACTTCTACATCATCCTCCTCACACTGTTCCTCTTCCTATCCATACCAGTCAACACTGCAAAAAGGGTCAATAGTAATACCAGCGCTAATGAATCTGGTACAAGAAGAATTCTGCACCAGCCATTGTTCCCGGCGAGTTCGGCACCACCGCCACCACTTCCGGTGGAGAGTCCTCCATCGCCGGAAGGCGGAAACATCCCCTTCTTCCACGAGTACCCGGCGGGGCCCCCACCGGATCAGAGCCAAGCAGCCCCGTCCAATTCCAACACTTCAATTGCAAACCCAACTGCAACACAACCCGCAAAGGGAACAAAGAAGGTAGCAATCGCGATCTCAGTGGGGATTGTGACCCTTGGAATGCTATCAGCGTTGGCCTTCTTTTTGTACAAACACAGAGCCAAACACCCGGTGGAGTCTCAGAAACTGGTCGCTGGGAGTGGGAATACCAATAACAATAGCCATATCTCAAACAGAAACGAGGTTGATTCAACTGCGCCACCGTCGAGTTTCCTCTACATTGGGACAGTGGAACCCACGCGAGCCTCTACCAACGACTCGCGAGACAACAGAGATGTTAATAAGGCCAACAGATCGCCGTATCACAAGCTCAAGCGATCCGATCGCTACCGTCCAAGTCCTGAGTTGCAGCCAATGCCACCGCTCAGTAAGCCTCCCGACGGAAACTACCCGCCGGCGGTCTCCTCCTCATCGGAGTCCGATGAGGAAAGCCGCGGCACGGTGTTTCACTCGCCGCAGAACTCGTCGGTCGATGGGTACTACACGCCGGCTTCGCGGCAGAGCTCTCTTGTCAACGGTAGTCCCGCGAAGCGTGACACGAATTCCACGCCCACACCCGTTGTTCCGTTTTCCAAGAGAACTTCGCCCAAGTCACGCGTTTCGGCACCCTCGCCGGAGATACGCCGTGTCATCATTCCGTCGATAAAGCAGCCCCCTCCACCGTCGCCGCCGCTACCTAAGCATTCCAGAAAGCCGAAATTTTCGGCGCCTCCCCCACCTCCGAATTTGAAGCATCTTCAGTCAACAACCGACACTGTTTCGCACGTGTCAAATACTTTACTCAATCCTCCTCCACCACCTCCACCTCCGCCTCCTCCACCGCCGCCGCGAAAATCAGAGTCTCCGGCTGTTAGTGTCTCCTCTAATTCTGCATCTGTAAAGAGGCAGTCTTTGTCACCAATTGAAGGTAGTGTGACGAAAGGTTCAGAAGAGGTTGAACAGAGTGTGAGTTCTTCCGAGAGGCTTCAAGCCAATGACAGGGATGGAGCCAAACCAAAATTAAAGGCTCTGCATTGGGATAAAGTGCGTGCGACCTCAGACCGTGCTACAGTGTGGGACCAGATAAAATCAAGCTCGTTTCAGTTAAATGAAGACATGATGGAATCGTTGTTTGGATGCAAAGCCACGAATTCTGCTCCGAAAGAACCTCCCAGAAAATCAGTTTTTCCTTCTGTTGATCAGGAGAACAGGGTGTTAGACCCGAAGAAGTCACAGAACATAGCTATACTGCTCAGGGCTTTGAATGTGACCAGAGAGGAGGTGTCTGAAGCTCTTTTAGATGGGAATCCTGAAGGTTTGGGCACTGAGCTATTGGAAACACTAGTAAAGATGGCTCCGACTAAAGAGGAAGAGATAAAGCTTAAAAACTACGATGGTGATCTCTCAAAACTGGGATCTGCAGAAAGGTTTCTTAAAGCAGTGCTTGATATCCCTTTTGCCTTTAAAAGAGTTGAAGCTATGCTCTATAGAGCCAACTTTGATGCAGAAATTAACTACCTTAGAAAGTCTTTTCAAACCATGGAGGCTGCAAGTGATGAATTAAAGAACAGCCGCTTATTCCTCAAACTCCTTGAAGCTGTTCTAAGGACGGGAAACAGAATGAATGTTGGCACTAATCGAGGGGATGCTAAAGCTTTCAAACTGGAGACACTCTTGAAACTAGTAGATATAAAGGGAACAGATGGAAAAACCACATTGCTCCACTTTGTGGTTCAAGAGATCATTAGATCCGAAGGTGCAGGAGCTGAATCTGCAAATGAGAATGTGAAAATGGATTCCAAATTTAATGAGGATGAGTTTAAGAAGCAAGGATTGCAGGTTGTGGCAGGGCTTAGTAGAGATCTTAGTAATGTAAAAAAGGCAGCTGGAATGGATTCAGATGTCTTGAGCAGCTATCTTTCAAAGCTTGAAACAGGACTTGATAAAGTGCGATTGGTTTTGCAATATGAAAAGCCAGATGTGCTTGGCAATTTCTTTAACTCTACGAAGCTATTTCTGAAATATGCTGAAGATGAAATTGTAAGGATTAAAGCGGATGAGAGAAAAGCTTTGTACCTTGTAAAAGAAGTCACCGAATACTTTCATGGGAATGCAGCAAAGGAAGAAGCCCACCCTCTCAGAATTTTCATGATTGTGAGAGACTTTCTGAGTATTTTGGATCTAGTGTGCAAAGAAGTGGAAAAAATGCATGATAAAATTGTTGGTGGTTCTGGCAGATCTTTCCGAATACCTCCAAATGTATCATTACCTGTTATCAATAGGTACAACCATCCAAAGCAGGATAGAAGCTCAGACGAGGAAAGTTCATCCCCCTAG 2640 0.475 MKAPHLSFFYFYIILLTLFLFLSIPVNTAKRVNSNTSANESGTRRILHQPLFPASSAPPPPLPVESPPSPEGGNIPFFHEYPAGPPPDQSQAAPSNSNTSIANPTATQPAKGTKKVAIAISVGIVTLGMLSALAFFLYKHRAKHPVESQKLVAGSGNTNNNSHISNRNEVDSTAPPSSFLYIGTVEPTRASTNDSRDNRDVNKANRSPYHKLKRSDRYRPSPELQPMPPLSKPPDGNYPPAVSSSSESDEESRGTVFHSPQNSSVDGYYTPASRQSSLVNGSPAKRDTNSTPTPVVPFSKRTSPKSRVSAPSPEIRRVIIPSIKQPPPPSPPLPKHSRKPKFSAPPPPPNLKHLQSTTDTVSHVSNTLLNPPPPPPPPPPPPPPRKSESPAVSVSSNSASVKRQSLSPIEGSVTKGSEEVEQSVSSSERLQANDRDGAKPKLKALHWDKVRATSDRATVWDQIKSSSFQLNEDMMESLFGCKATNSAPKEPPRKSVFPSVDQENRVLDPKKSQNIAILLRALNVTREEVSEALLDGNPEGLGTELLETLVKMAPTKEEEIKLKNYDGDLSKLGSAERFLKAVLDIPFAFKRVEAMLYRANFDAEINYLRKSFQTMEAASDELKNSRLFLKLLEAVLRTGNRMNVGTNRGDAKAFKLETLLKLVDIKGTDGKTTLLHFVVQEIIRSEGAGAESANENVKMDSKFNEDEFKKQGLQVVAGLSRDLSNVKKAAGMDSDVLSSYLSKLETGLDKVRLVLQYEKPDVLGNFFNSTKLFLKYAEDEIVRIKADERKALYLVKEVTEYFHGNAAKEEAHPLRIFMIVRDFLSILDLVCKEVEKMHDKIVGGSGRSFRIPPNVSLPVINRYNHPKQDRSSDEESSSP 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00519 879 MobiDBLite consensus disorder prediction 389 431 - -
Vian10g00519 879 Gene3D Formin, FH2 domain 426 839 IPR042201 -
Vian10g00519 879 MobiDBLite consensus disorder prediction 222 236 - -
Vian10g00519 879 SUPERFAMILY Formin homology 2 domain (FH2 domain) 373 838 - -
Vian10g00519 879 MobiDBLite consensus disorder prediction 322 352 - -
Vian10g00519 879 MobiDBLite consensus disorder prediction 192 220 - -
Vian10g00519 879 MobiDBLite consensus disorder prediction 50 113 - -
Vian10g00519 879 MobiDBLite consensus disorder prediction 238 309 - -
Vian10g00519 879 MobiDBLite consensus disorder prediction 859 879 - -
Vian10g00519 879 PANTHER FORMIN-RELATED 17 873 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Vian10g00519 879 MobiDBLite consensus disorder prediction 150 441 - -
Vian10g00519 879 MobiDBLite consensus disorder prediction 353 367 - -
Vian10g00519 879 ProSiteProfiles Formin homology-2 (FH2) domain profile. 432 853 IPR015425 -
Vian10g00519 879 SMART it6_source 432 842 IPR015425 -
Vian10g00519 879 MobiDBLite consensus disorder prediction 151 191 - -
Vian10g00519 879 MobiDBLite consensus disorder prediction 368 388 - -
Vian10g00519 879 Pfam Formin Homology 2 Domain 437 827 IPR015425 -
Vian10g00519 879 MobiDBLite consensus disorder prediction 90 110 - -
Vian10g00519 879 MobiDBLite consensus disorder prediction 53 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00519 Vian-Chr10 4850623 4855678 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00519 35 869 FH2 protein (formin) Gene Family AT5G67470 57.350 0.0 839
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00519 - - gmx:100798670 1327
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00519 10 4850623 4855678 Vian10g00519 10 4850623 4855678 ECH
Vian10g00519 10 4850623 4855678 Vian1g01578 1 17785044 17788644 PCT