Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00518 ATGACGAAGAAGACGCGGATTCAAAGTGGTAGGCATAGGAAGGGTTTGCTTCCACCTTTGCTCGTAGGTCTTCCCAGTGGAAGTCCTTGCAGAAGAAAAGAAAAGCGTAAAACAATGACTAACATGATTAACGATCATTCTAAGTCTCTTCAAAATGTCAATAAATTAATTCCTATATCACCTCCTATGTCACGTTCAATATCAATCAATTCATTTTACGATTGTAAGACATCTTATAATTCAAAACCAAGAACACAAAACAACAACGACTCTTCATCAAGAAAGGATTTGTGGGAGCGCCTTTTCTATCAAGGTTATAAAGCAGATGTTTGCATTAACACTAACAGTGGTGATGTTGTTTATGCTCATTCTAACATTATTGCCATGGCTTCTCCTGTATTAAAAGGCATGCTAAAGCAAGCACATCGACATGGACGATGGCGAACAATATCAATCATTGGGGTTCCACATGATGCAGTCCAAGTTTTTATTCGATATTTGTACACTTTTAGATACGAGAAAGAAGATATGGATGAATTTGTTCTACATTTGTTGGTGTTGTCACATGTATACATGGTTCCTCACTTGAAGTGTGAATGTGAACAAAAACTAGAATTGGGTTTACTCACCATGGATAACTTGGTTGACGTGTTTCAACTAGCGTTGTTATGTGATGTTCCAAGACTTAGTCTCATTTGTCATCGCAAGATATTGAAAAACTTCAAAGTTGTTTCAGAGTCAGAAGGATGGAAAGCAATGAAGTTGAGTCACCCACTTCTAGAAAAGGAAATTCTAGAGTCAATGATCAATGAAGAAACTATAAAAAAGGAAAGGATCAGAAAAATGAATGAAAGAAAGGTATATCTACAATTGTATGAGGCCATGGAAGCTCTTGTTCACATATGTAAAGATGGTTGTCGAACTATTGGTCCTTATGATAAAGATCTTCAAGCAAACCAACCATGTAAGTATTCAGCATGCAACGGATTAGAGTTGCTTGTTCGTCATTTTGCTGCATGTAAGTTGAGAGTTCCTGGAGGATGTGTTCATTGCAAGAGGATGTGGCAATTATTCGAGTTACATTCTCGATTATGTGTTAATCCGGACGATTGTAGAGTTCCTTTATGCAGGAACTTTAAGGAACGAATATCAAAACAAAGCAAGAAAGATGAAATTAGGTGGAAAATTTTGGTTGAAAATATCTTGAGAACAAGAGGAATCAAGATAGCATCATGTTTTTTGCAACAATGA 1251 0.3653 MTKKTRIQSGRHRKGLLPPLLVGLPSGSPCRRKEKRKTMTNMINDHSKSLQNVNKLIPISPPMSRSISINSFYDCKTSYNSKPRTQNNNDSSSRKDLWERLFYQGYKADVCINTNSGDVVYAHSNIIAMASPVLKGMLKQAHRHGRWRTISIIGVPHDAVQVFIRYLYTFRYEKEDMDEFVLHLLVLSHVYMVPHLKCECEQKLELGLLTMDNLVDVFQLALLCDVPRLSLICHRKILKNFKVVSESEGWKAMKLSHPLLEKEILESMINEETIKKERIRKMNERKVYLQLYEAMEALVHICKDGCRTIGPYDKDLQANQPCKYSACNGLELLVRHFAACKLRVPGGCVHCKRMWQLFELHSRLCVNPDDCRVPLCRNFKERISKQSKKDEIRWKILVENILRTRGIKIASCFLQQ 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00518 416 Pfam BTB/POZ domain 104 204 IPR000210 GO:0005515
Vian10g00518 416 CDD BACK 212 267 - -
Vian10g00518 416 FunFam BTB/POZ and TAZ domain-containing protein 2 282 406 - -
Vian10g00518 416 ProSiteProfiles BTB domain profile. 108 176 IPR000210 GO:0005515
Vian10g00518 416 FunFam BTB/POZ and TAZ domain-containing protein 2 210 280 - -
Vian10g00518 416 SUPERFAMILY TAZ domain 285 385 IPR035898 -
Vian10g00518 416 Gene3D Potassium Channel Kv1.1; Chain A 76 208 IPR011333 -
Vian10g00518 416 ProSiteProfiles Zinc finger TAZ-type profile. 282 379 IPR000197 -
Vian10g00518 416 MobiDBLite consensus disorder prediction 1 31 - -
Vian10g00518 416 Pfam TAZ zinc finger 292 376 IPR000197 -
Vian10g00518 416 SUPERFAMILY POZ domain 86 204 IPR011333 -
Vian10g00518 416 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 84 411 IPR044513 -
Vian10g00518 416 Gene3D - 209 282 - -
Vian10g00518 416 Gene3D TAZ domain 283 404 IPR035898 -
Vian10g00518 416 SMART BTB_4 108 208 IPR000210 GO:0005515
Vian10g00518 416 SMART TAZ_2 285 377 IPR000197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00518 Vian-Chr10 4837571 4843815 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Vian10g00518 BTB 8.5e-11 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00518 - - var:108334777 838.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00518 10 4837571 4843815 Vian10g00518 10 4837571 4843815 ECH