Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vian10g00516 | ATGATGGAGGGTTATTTGAATGAGAATTTTGAAGTGAAGCCCAAAAACTCTTCTGAAGAGGCTCTTCAGAGATGGAGGAAACTGTGCGGGTTTGTCAAGAACCCCAAACGACGCTTTCGTTTCACTGCCAATCTCGCCATGAGAGACAAAGCTGCTGCTATGCGTCGTACCAATCAGGAGAAGCTGAGGATTGCAGTTTTGGTTTCCAAAGCAGCTATTCAATTTATCCAAAGCGTGCAACTAAGCGATTACAAAGTTCCAGAGGAAGTTAAAGCTGCAGGTTATCAAATCTGTGGCGATGAATTGGGGTGTATCGTTGAAGGCCATGATGTAAAGAAGTTCAGACTTCATGGTGGGGTTAGTGGCCTTGCAGAGAAGCTTTCTACATCAACCAGTGAGGGGCTTAACAGTGACAGCGAGTCATTGAATAGGAGACAGCAGATATATGGAATCAACAAATTTACTGAAAGTGAAGCTACAAGTTTCTGGGTTTTTGTTTGGGAAGCCTTTCAAGACATGACTCTGATGATACTTGGAGTGTGTGCTATTGTGTCACTGCTAGTTGGCATTGCAACTGAAGGATGGCCGAAGGGAGCTCATGATGGTCTTGGAATTGTTGCAAGTATCTTACTTGTTGTCTTTGTGACAGCAACTAGTGATTATCGCCAATCATTGCAATTCAAGGATTTAGACAAGGAGAAGAAGAAAATATCCATTCAGGTCACAAGAAGTGGATACAGGCAGAAAATGTCTATATATGAATTACTTCCGGGAGACATTGTGCATCTTGCCATTGGTGATCAAGTCCCTGCTGATGGACTCTTTGTTTCAGGATTTTCTGTGTCGATTGATGAGTCAAGCTTAACAGGCGAGAGTGAGCCAGTTATGGTGAATTCTGAATATCCATTTCTTCTTTCTGGAACCAAGGTCCAAGATGGATCATGCAAGATGTTGATTACCAGTGTTGGCATGAGGACCCAATGGGGTAAGTTGATGGCTACTCTCAGTGAAGGTGGAGATGATGAAACCCCGCTACAGGTGAAGTTGAACGGTGTTGCAACCATTATCGGGAAGATAGGTCTATTCTTTGCAGTGGTTACTTTTTCAGTTCTGGTGCAAGGACTTGTAAGCAAAAAACTCCAAGAAGGAAGCTTGTCGAGCTGGAATGGGGATGATGCGTTGGAGCTGTTGGAGTTCTTTGCAGTTGCAGTCACTATAGTTGTCGTTGCCGTTCCAGAGGGGCTGCCATTAGCTGTGACATTGAGCCTTGCATTTGCTATGAAGAAAATGATGAATGACAAAGCCCTTGTGAGACATTTGGCAGCCTGTGAGACCATGGGATCAGCCACAACTATATGTAGTGACAAGACTGGGACACTAACAACGAACCACATGACTGTTGTGAAAACATGCTTTTGCATGAATAGCAAGGAAGTGAGCAATAATAAGACCTCTGGTTTGTGTTCTGAACTCCCAGAATCTGCTGTGAAACTGCTGCTGCAGTCAATATTCAATAATACAGGAGGAGAGGTTGTGGTTAACCAAAACGGAAAACGTGAGATTTTAGGGACTCCAACTGAGGCTGCAATATTGGAGTATGGTTTGTCTTTAGGTGGAGATTTTCTAGGAGAGAGACAAGCATGTAATCTTGTTAAAGTTGAGCCATTCAATTCCACGAAGAAAAAAATGAGTGTGGTGGTTGAGCTCCCTGATGGAGGCTTAAGAGCCCACTGCAAAGGTGCTTCCGAGATAATTCTGGCTGCTTGTGACAAAGTTCTCAACTCAAATGGCGAGGTTGTACCCCTTGATGAAGAATCAACGGGCCATCTTCAGGCCACAATAAACCAGTTTGCAAGTGAGGCACTTAGAACACTATGCCTTGCTTATGTGGAATTGGAAGACGGGTTCTCTCCTGAAGACCCTATTCCTGCTTCTGGATATACTTGCATAGGAGTTGTTGGTATAAAAGATCCTGTTCGTCCTGGTGTTAAGGAATCTGTGGCAGTGTGTCGCTCAGCTGGAATAACAGTACGAATGGTTACTGGGGACAACATTAACACTGCAAAGGCTATAGCCAGGGAGTGTGGAATTTTAACTGATGACGGCATAGCAATTGAAGGACCAGAGTTTAGAGAGAAGAGTGAGAAGGAGTTGCTTGAACTGATTCCCAAAATTCAGGTTATGGCTCGATCTTCACCTTTGGACAAACATACATTGGTGAAACACTTGCGCACCACGTTTGGGGAAGTGGTAGCCGTAACAGGTGATGGAACTAACGATGCCCCAGCCCTTCATGAAGCTGACATTGGACTTGCAATGGGCATTGCAGGAACTGAGGTCGCAAAAGAAAGCGCAGATGTCATAATTCTGGATGATAACTTCTCCACGATAGTAACAGTGGCCAAATGGGGACGTTCAGTTTACATAAATATTCAGAAGTTCGTACAGTTTCAGCTGACCGTTAATGTGGTTGCATTAATAGTAAACTTCACGTCAGCTTGCTTGACAGGAACCGCGCCCCTCACAGCTGTTCAACTTTTGTGGGTGAACATGATAATGGACACACTGGGAGCACTTGCGCTTGCTACTGAACCTCCAAATGATGATTTAATGAAACGCACACCTGTTGGAAGGAAGGGGAATTTCATCAGCAACGTCATGTGGAGGAACATCTTGGGACAATCCTTGTATCAGTTTATGGTGATATGGTTTCTGCAGTCAAGAGGAAAATCAATCTTTTTACTTGACGGCCCCAATTCGGACCTTGTCTTAAACACGCTTATTTTCAACTCATTTGTCTTCTGTCAGGTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTCAAAGGCATATTGGATAATTATGTTTTCGTGGGTGTGATCAGCGCTACAGTTTTCTTCCAAATCGTAATAGTTGAGTACTTGGGAACCTTCGCAAACACAACACCTCTCACCCTGACACAGTGGTTCTTTTGCTTATTCGTTGGATTTTTGGGCATGCCAATTGCTGCTCGCTTAAAGAAGATCCCTGTTTGA | 3048 | 0.4373 | MMEGYLNENFEVKPKNSSEEALQRWRKLCGFVKNPKRRFRFTANLAMRDKAAAMRRTNQEKLRIAVLVSKAAIQFIQSVQLSDYKVPEEVKAAGYQICGDELGCIVEGHDVKKFRLHGGVSGLAEKLSTSTSEGLNSDSESLNRRQQIYGINKFTESEATSFWVFVWEAFQDMTLMILGVCAIVSLLVGIATEGWPKGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKISIQVTRSGYRQKMSIYELLPGDIVHLAIGDQVPADGLFVSGFSVSIDESSLTGESEPVMVNSEYPFLLSGTKVQDGSCKMLITSVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVVTFSVLVQGLVSKKLQEGSLSSWNGDDALELLEFFAVAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNHMTVVKTCFCMNSKEVSNNKTSGLCSELPESAVKLLLQSIFNNTGGEVVVNQNGKREILGTPTEAAILEYGLSLGGDFLGERQACNLVKVEPFNSTKKKMSVVVELPDGGLRAHCKGASEIILAACDKVLNSNGEVVPLDEESTGHLQATINQFASEALRTLCLAYVELEDGFSPEDPIPASGYTCIGVVGIKDPVRPGVKESVAVCRSAGITVRMVTGDNINTAKAIARECGILTDDGIAIEGPEFREKSEKELLELIPKIQVMARSSPLDKHTLVKHLRTTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALIVNFTSACLTGTAPLTAVQLLWVNMIMDTLGALALATEPPNDDLMKRTPVGRKGNFISNVMWRNILGQSLYQFMVIWFLQSRGKSIFLLDGPNSDLVLNTLIFNSFVFCQVFNEINSREMEKINVFKGILDNYVFVGVISATVFFQIVIVEYLGTFANTTPLTLTQWFFCLFVGFLGMPIAARLKKIPV | 1015 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vian10g00516 | 1015 | PRINTS | P-type cation-transporting ATPase superfamily signature | 778 | 790 | - | - | |
Vian10g00516 | 1015 | PRINTS | P-type cation-transporting ATPase superfamily signature | 673 | 683 | - | - | |
Vian10g00516 | 1015 | PRINTS | P-type cation-transporting ATPase superfamily signature | 754 | 773 | - | - | |
Vian10g00516 | 1015 | PRINTS | P-type cation-transporting ATPase superfamily signature | 284 | 298 | - | - | |
Vian10g00516 | 1015 | PRINTS | P-type cation-transporting ATPase superfamily signature | 453 | 467 | - | - | |
Vian10g00516 | 1015 | PRINTS | P-type cation-transporting ATPase superfamily signature | 651 | 662 | - | - | |
Vian10g00516 | 1015 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 6 | 48 | IPR024750 | GO:0005516 | |
Vian10g00516 | 1015 | SUPERFAMILY | HAD-like | 451 | 859 | IPR036412 | - | |
Vian10g00516 | 1015 | PANTHER | CATION TRANSPORTING ATPASE | 80 | 1014 | - | - | |
Vian10g00516 | 1015 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 459 | 663 | IPR023299 | GO:0000166 | |
Vian10g00516 | 1015 | FunFam | Calcium-transporting ATPase | 463 | 658 | - | - | |
Vian10g00516 | 1015 | Gene3D | - | 450 | 799 | IPR023214 | - | |
Vian10g00516 | 1015 | Gene3D | - | 168 | 1003 | - | - | |
Vian10g00516 | 1015 | Pfam | Cation transporting ATPase, C-terminus | 839 | 1012 | IPR006068 | - | |
Vian10g00516 | 1015 | SMART | Cation_ATPase_N_a_2 | 116 | 190 | IPR004014 | - | |
Vian10g00516 | 1015 | Gene3D | - | 463 | 658 | IPR023299 | GO:0000166 | |
Vian10g00516 | 1015 | FunFam | Calcium-transporting ATPase | 771 | 1015 | - | - | |
Vian10g00516 | 1015 | SFLD | Haloacid Dehalogenase | 435 | 806 | - | - | |
Vian10g00516 | 1015 | FunFam | Calcium-transporting ATPase | 216 | 336 | - | - | |
Vian10g00516 | 1015 | SUPERFAMILY | Calcium ATPase, transduction domain A | 239 | 333 | IPR008250 | - | |
Vian10g00516 | 1015 | Pfam | Cation transporter/ATPase, N-terminus | 118 | 185 | IPR004014 | - | |
Vian10g00516 | 1015 | FunFam | Calcium-transporting ATPase | 17 | 77 | - | - | |
Vian10g00516 | 1015 | Pfam | Cation transport ATPase (P-type) | 514 | 592 | - | - | |
Vian10g00516 | 1015 | PRINTS | H+-transporting ATPase (proton pump) signature | 754 | 770 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
Vian10g00516 | 1015 | PRINTS | H+-transporting ATPase (proton pump) signature | 610 | 628 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
Vian10g00516 | 1015 | PRINTS | H+-transporting ATPase (proton pump) signature | 786 | 811 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
Vian10g00516 | 1015 | FunFam | Calcium-transporting ATPase | 647 | 799 | - | - | |
Vian10g00516 | 1015 | Gene3D | - | 139 | 336 | - | - | |
Vian10g00516 | 1015 | SFLD | p-type atpase | 435 | 806 | IPR044492 | - | |
Vian10g00516 | 1015 | Gene3D | - | 17 | 77 | - | - | |
Vian10g00516 | 1015 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 110 | 1015 | IPR006408 | GO:0005388|GO:0005524|GO:0016020|GO:0070588 | |
Vian10g00516 | 1015 | CDD | P-type_ATPase_Ca_PMCA-like | 142 | 887 | - | - | |
Vian10g00516 | 1015 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 455 | 461 | IPR018303 | - | |
Vian10g00516 | 1015 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 118 | 1014 | IPR023298 | - | |
Vian10g00516 | 1015 | NCBIfam | HAD-IC family P-type ATPase | 395 | 477 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
Vian10g00516 | 1015 | NCBIfam | HAD-IC family P-type ATPase | 725 | 840 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
Vian10g00516 | 1015 | Pfam | E1-E2 ATPase | 237 | 431 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vian10g00516 | Vian-Chr10 | 4824778 | 4829467 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vian10g00516 | 2 | 1015 | Primary Pumps ATPases | AT4G37640 | 81.675 | 0.0 | 1714 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vian10g00516 | K01537 | - | gmx:547567 | 1872.06 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vian10g00516 | 10 | 4824778 | 4829467 | Vian10g00516 | 10 | 4824778 | 4829467 | ECH | |
Vian10g00516 | 10 | 4824778 | 4829467 | Vian1g01577 | 1 | 17779732 | 17783975 | PCT |