Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00508 ATGGATACCACGTTGTTTGGTGTAGTGAGATTCCAACATCAACTCCAACCTCCTCCTCAAGGTGATCAAGATCAATCCCTCAACAACTCCACCACCACCACCAGCTCTCCATCCTCCAGACAACACAACTATCCCTACCCACAAGAAGACGAAGAATGCTTCAACTTTTTCATGGATGAAGAAGACCTATCCTCGTCTTCTTCCAAGCACTACTATCCCTATCAACCCCACCCTTCCTCCACTACACCTACCACCACCACCACCGACCTCTCCTTCTCTCCCACCCGAGACGCCGCCTTCCCTTTCCAGCTCTCCGGCAAGTGGGCCAACGACATCCTCCTCGAAACCGCACGTGCCGTCTCCGACAAGAACACCACGCGCCTCCAGCAACTTATGTGGATGCTCAACGAACTCGCCTCCCCCTACGGCGACACCGACCAGAAACTCGCCTCCTACTTCCTCCAAGCCTTCTTCAGCCGCATCACCCAAGCCGGGGACCGAACCTATCGAACCTTGGCCTCGGCCTCCGAGAGAACATGCTCCTTCGAATCCACGCGCAAGACCGTGCTGAAGTTCCAAGAGGTCAGTCCCTGGACAACCTTCGGACACGTGGCGTCCAATGGTGCCATCTTGGAAGCCTTGGAAGGCGAGCCCAAACTACACATAGTTGACATCAGCAACACCTATTGCACCCAATGGCCTACGCTCTTCGAAGCCCTTGCCACTCGAAACGACGACACTCCGCACCTCCGTCTCACCTCCCTCGTCACCGCCGCCTCCGCGCACAAGGTCATGAAGGAAATCGGCGCCAGAATGGAGAAATTTGCCAGACTCATGGGCGTGCCCTTTCAATTCAACGTCGTTCAGCACTTAGGTCAACTTTCTGACTTCGATTTCGGTGCCTTGGATATCAAAGAGGACGAGGCTTTGGCTATTAACTGTGTCAATACTTTGCATTCGGTCTCCGCCATCGGGAACCACCGCGAAGCAGTGATATCCTCGCTGAGGAGGCTGCAGCCGAGGATCGTGACGGTGGTGGAGGAGGAGGCGGACTTGGACGTGGGATTGGAGGGGTTGGAGTTCGTGAAGGGTTTTGAAGAGTGTTTGAGGTGGTTTAGGGTTTACTTCGAAGCGTTAGAAGAGAGCTTTCCGAAGACGAGCAACGAGCGGTTGATGCTGGAGCGGGCGGCGGGGAGGGCGGTGGTCGACCTGGTGGCGTGTTCAGCTTCGGATTCGGTGGAGCGACGGGAGAGGGCGGGGCGGTGGACGAGGAGGATGCATGGAGGTGGATTCAATACGGTGGCGTTTAGCGAAGAGGTGTGTGATGACGTGAGAGCGTTGTTGAGGAGGTATAGGGAGGGATGGTCAATGGCACAGTGCTCCGACGCCGGAATATACCTTTCGTGGAAGGACCAGCCGGTGGTGTGGGCCAGTGCATGGAGGGCCTTGACGTAG 1455 0.5622 MDTTLFGVVRFQHQLQPPPQGDQDQSLNNSTTTTSSPSSRQHNYPYPQEDEECFNFFMDEEDLSSSSSKHYYPYQPHPSSTTPTTTTTDLSFSPTRDAAFPFQLSGKWANDILLETARAVSDKNTTRLQQLMWMLNELASPYGDTDQKLASYFLQAFFSRITQAGDRTYRTLASASERTCSFESTRKTVLKFQEVSPWTTFGHVASNGAILEALEGEPKLHIVDISNTYCTQWPTLFEALATRNDDTPHLRLTSLVTAASAHKVMKEIGARMEKFARLMGVPFQFNVVQHLGQLSDFDFGALDIKEDEALAINCVNTLHSVSAIGNHREAVISSLRRLQPRIVTVVEEEADLDVGLEGLEFVKGFEECLRWFRVYFEALEESFPKTSNERLMLERAAGRAVVDLVACSASDSVERRERAGRWTRRMHGGGFNTVAFSEEVCDDVRALLRRYREGWSMAQCSDAGIYLSWKDQPVVWASAWRALT 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00508 484 ProSiteProfiles GRAS family profile. 100 481 IPR005202 -
Vian10g00508 484 MobiDBLite consensus disorder prediction 16 44 - -
Vian10g00508 484 MobiDBLite consensus disorder prediction 13 46 - -
Vian10g00508 484 MobiDBLite consensus disorder prediction 67 92 - -
Vian10g00508 484 Pfam GRAS domain family 111 481 IPR005202 -
Vian10g00508 484 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 109 474 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00508 Vian-Chr10 4765817 4767271 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00508 42 481 GRAS Transcription Factor Family AT4G37650 61.414 0.0 585
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vian10g00508 GRAS 1.2e-105 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00508 - - gmx:100820459 758.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00508 10 4765817 4767271 Vian10g00508 10 4765817 4767271 ECH
Vian10g00508 10 4765817 4767271 Vian1g01573 1 17723807 17725300 PCT