Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00490 ATGAAGCCTGTAGAAAATGGTGAAACCGTTGACATAAACTATCAAAATAGCTGGTTAGGTTTCTCCCTCTCCCCGCAGATGAATATAACTGTTCCTTCACACTCTCATCAAACACACCCTTCATCTGCTGCTGCTGCTGAAACAGTTCCACCAACGTATTACCACCACACACCTCTTCATAACTATGGAATCCTAGGTGAACATGTTGGAATGTTTTCTTCCTTGCCTATCGTGCCCCTTAAATCCAATGTCTCGTTCTATGGAATAGAGGCTATCAGCAGGTCACAAGCACAAGAAATGGCAACTACTTCGGCAATACCTCTGAGCTTGGATAGTATGTTTTACAACCAACTCTCATATCATGGATCGAACGATCCAAATAACCAAAACCATGTACAAGAGAACATCAGCAAGCAACAGCCACCATATTATTCTTCCTTAAGAAACAACCATGATGTGATTTTAGAAGGGTCTAAGCAGCAACTCCCTTGTATAGCTGAGGATGAAGTTGCTTGTCTGAAAAGTTGGTTCTCGAGGGACTTTCCTGCTTGTCAAGCGCAGGAGTCAAGGATGTTTGTTCCTTTGGAGGATAATGGAAGCAAATCTGGACCCAATATTGGATCAATAACATATGGGGATTTACATTCGTTGAATTTGTCTGTGAGCCCTACCAGACCATCAAGCCGTGTTACAGGTTCGCCTGCCATCAATGATACGAAGAAAAGGGGGCTTGAAATGGTGGACCAGAATCAGAAGAAAATAGTACATAGGAAATCCATAGACACCTTTGGGCAAAGAACATCTCAATATAGAGGTGTAACAAGGTGGACTGGTAGATATGAAGCTCATCTATGGGACAACAGTTGCAAGAAGGAGGGCCAAGGAAGGAAAGGAAGGCAAGGGGGTTATGATATGGAAGAAAAAGCTGCAAGAGCTTACGACATGGCCGCACTCAAGTATTGGGGACCCTCCTCTCATATAAATTTCCCTTTGGAAAATTATCAAAACGAACTTGAGGAAATGAAAAACATGACGAGACAAGAATATGTTGCTCATTTACGAAGGAAAAGCAGCGGATTCTCAAGAGGAGCATCCATGTATAGAGGAGTAACAAGGCACCACCAACATGGAAGGTGGCAAGCTCGAATTGGGAGAGTGGCTGGAAACAAAGATCTATATCTTGGAACCTTCAGCACCCAAGAGGAAGCAGCAGAAGCCTATGATATTGCTGCCATTAAATTCAGAGGAGTTAATGCTGTTACTAACTTTGATATAACAAGATATGACGTGGAAAAAATTATGGCGAGCGACAACCTTCTTAGCAGTGAACAAGCCAAGAGGAGCAGAGAGAAGGAGGATGGAACAAGAAACGAGGCCTTCGTTAACCAAAATCCTTGTGCATATGAACACAATAAAGAAACCATTGTAATGCAGAAAAGCTGCAAGATGGTTCCTTATCCACCCCACCAACAGCTTGACCAGAATCCACCAAGAATCGAGAGTTGCAGAACTCATTCCTTCTCAACGGCTATAGATAACATATTTCATCAAGAAGTAGAGGAATCGAGTAACATGGGAACACACTTGTCAAATCCTTCTTCTCTGGTGACAAGTTTGAGCAGCTCAAGAGAAGAGAGCCCAGATAAGACAAGCTTGCCAATGCTCTTTGGAATGCCTTCAACAGTGTCTAAATTATTCACTAACATTCCAACAAGTGACGGAGATTCTTGGGAGCTATCGTCCAATCTCAGGCCAGCTCTTTCTTTGCCTCAGATGCCAATTTTTGCTTCCTGGACCGATGCCTAA 1806 0.4302 MKPVENGETVDINYQNSWLGFSLSPQMNITVPSHSHQTHPSSAAAAETVPPTYYHHTPLHNYGILGEHVGMFSSLPIVPLKSNVSFYGIEAISRSQAQEMATTSAIPLSLDSMFYNQLSYHGSNDPNNQNHVQENISKQQPPYYSSLRNNHDVILEGSKQQLPCIAEDEVACLKSWFSRDFPACQAQESRMFVPLEDNGSKSGPNIGSITYGDLHSLNLSVSPTRPSSRVTGSPAINDTKKRGLEMVDQNQKKIVHRKSIDTFGQRTSQYRGVTRWTGRYEAHLWDNSCKKEGQGRKGRQGGYDMEEKAARAYDMAALKYWGPSSHINFPLENYQNELEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDITRYDVEKIMASDNLLSSEQAKRSREKEDGTRNEAFVNQNPCAYEHNKETIVMQKSCKMVPYPPHQQLDQNPPRIESCRTHSFSTAIDNIFHQEVEESSNMGTHLSNPSSLVTSLSSSREESPDKTSLPMLFGMPSTVSKLFTNIPTSDGDSWELSSNLRPALSLPQMPIFASWTDA 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00490 601 SUPERFAMILY DNA-binding domain 268 332 IPR016177 GO:0003677
Vian10g00490 601 CDD AP2 365 426 IPR001471 GO:0003700|GO:0006355
Vian10g00490 601 SUPERFAMILY DNA-binding domain 365 425 IPR016177 GO:0003677
Vian10g00490 601 Pfam AP2 domain 269 322 IPR001471 GO:0003700|GO:0006355
Vian10g00490 601 Pfam AP2 domain 367 416 IPR001471 GO:0003700|GO:0006355
Vian10g00490 601 Coils Coil 331 351 - -
Vian10g00490 601 SMART rav1_2 366 430 IPR001471 GO:0003700|GO:0006355
Vian10g00490 601 SMART rav1_2 269 336 IPR001471 GO:0003700|GO:0006355
Vian10g00490 601 ProSiteProfiles AP2/ERF domain profile. 366 424 IPR001471 GO:0003700|GO:0006355
Vian10g00490 601 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 233 500 - -
Vian10g00490 601 MobiDBLite consensus disorder prediction 523 554 - -
Vian10g00490 601 CDD AP2 268 330 IPR001471 GO:0003700|GO:0006355
Vian10g00490 601 Gene3D AP2/ERF domain 268 332 IPR036955 GO:0003700|GO:0006355
Vian10g00490 601 Gene3D AP2/ERF domain 366 426 IPR036955 GO:0003700|GO:0006355
Vian10g00490 601 MobiDBLite consensus disorder prediction 523 548 - -
Vian10g00490 601 ProSiteProfiles AP2/ERF domain profile. 269 330 IPR001471 GO:0003700|GO:0006355
Vian10g00490 601 FunFam AP2-like ethylene-responsive transcription factor 365 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00490 Vian-Chr10 4594606 4597818 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00490 11 601 AP2-EREBP Transcription Factor Family AT4G37750 41.327 3.09e-132 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vian10g00490 AP2 8e-06 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00490 K09285 - gmx:100794433 910.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00490 10 4594606 4597818 Vian1g01549 1 17435532 17438935 PCT