Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00487 ATGGGAAGGGCTCCTTGTTGTGACAAAGCCAACGTCAAGAAAGGTCCATGGTCACCTGAAGAAGATGCTAAACTCAAGGCTTATATTGAGCACCATGGTACTGGTGGCAACTGGATAGCCTTGCCCCAGAAAATAGGCCTTAAGAGATGCGGGAAAAGCTGTCGTCTTAGATGGCTAAATTATCTTCGCCCAAACATCAAACATGGGGGATTCTCAGAAGAAGAAGACAACATCATCTGCAGCCTTTACGTCAGTATTGGAAGCAGGTGGTCAATTATAGCAGCTCAGTTACCAGGGCGCACAGACAATGATATAAAGAACTATTGGAACACTAGGCTAAAGAAGAAGCTTCTTGGCAAACAAAGAAAGGAACAGCAGATTCAAGCTCGCCGTGTCAGCAACAATCAGCAGAAGCAAGATGTGAAAAGAGAAACCGAGAATTTGATAGCAGCTTCTGAAGTCATCAATCAAGTCCCCTATTGGTCTGCAGAATATTCTTCTTTGCCTCTCCCAGTGACTGATGTTTCCTTTCAACACTACAGTCTGAACAATCAAACTTCTCTCAGGAACTTGATGGTTAACAAACTAGAGGGAATTAGATTTTCCAACGATCATCATCAGCAGCAGCAGCAGCCATACACCAATGCATGTGAAATTCCCTCCCTGCCAAACCAGGTTTTTCCAACCATGGTAAATCATGTGGCCGTCGTGAGTGATGAAAACAATAGCGTCCCTTATCAGCCATCAAATATATTTCAAGGGTTTGAAAACTTCCCGAGTGATTTTTGCGAACTGGTCTGCGTGAACTCGCAAGAAATGGATCGGTCAATGGAGGGTTTTAACTACGGAAGGGAATCCATGGACGTCATGAGCAATGGTGGTAGCACCAACACAACTTCAACAGAAAGCACTAGTTGGGGTGACATGAACTCTTTGGTTTACTCACCTTTGGTTTCTGACTACGAAGGTTGCCGACAGGGAAATCCTGGAAATGTTGTTGGTTTCGAAGAGTGTAACTACTTTGGAATGCAGATGCAATAA 1041 0.4409 MGRAPCCDKANVKKGPWSPEEDAKLKAYIEHHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVSIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKQRKEQQIQARRVSNNQQKQDVKRETENLIAASEVINQVPYWSAEYSSLPLPVTDVSFQHYSLNNQTSLRNLMVNKLEGIRFSNDHHQQQQQPYTNACEIPSLPNQVFPTMVNHVAVVSDENNSVPYQPSNIFQGFENFPSDFCELVCVNSQEMDRSMEGFNYGRESMDVMSNGGSTNTTSTESTSWGDMNSLVYSPLVSDYEGCRQGNPGNVVGFEECNYFGMQMQ 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00487 346 CDD SANT 71 113 IPR001005 -
Vian10g00487 346 SMART sant 13 64 IPR001005 -
Vian10g00487 346 SMART sant 67 115 IPR001005 -
Vian10g00487 346 Gene3D - 7 68 - -
Vian10g00487 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vian10g00487 346 PANTHER OS09G0431300 PROTEIN 1 302 - -
Vian10g00487 346 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vian10g00487 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Vian10g00487 346 CDD SANT 16 62 IPR001005 -
Vian10g00487 346 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Vian10g00487 346 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Vian10g00487 346 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vian10g00487 346 FunFam Transcription factor RAX3 7 68 - -
Vian10g00487 346 FunFam Transcription factor RAX3 70 147 - -
Vian10g00487 346 Gene3D - 70 146 - -
Vian10g00487 346 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00487 Vian-Chr10 4546612 4547975 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00487 1 315 MYB Transcription Factor Family AT3G49690 48.348 4.74e-90 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian10g00487 Myb_DNA-binding 9.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00487 K09422 - gmx:106795158 605.905