Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00485 ATGGGTTTTGATCACGATGCCAGTACCTCTGGCCTTCACCTCGTTCTAGGGTTATCTTTGACTGCTACCACCACTCCATCTACCAAGCCTCAAGATCATCACCATCATCATCATCATCATTTTTGTGTTGTTAAGCCTTCGCCAACCAAGCCTAATTCCCCCAATGAACCATCTTTGACGTTGGGTTTGTCTGGCGATAGCTGCCACCTAGCCAAGCAAGTGCCCAACAACAGTAAGGTTTATTGTGAGGACCCTCTTGACATGTCTAGACAGACGTCACCTCACAGCGTGGTTTCGTCTTTCTCAACTGGGAGGGTTGTGAAGAGGGAGAGAGATCTTAGCTTTGAAGAGGTAGAGGCAGAGGCAGAGGCAGAAGAGAGGGTTTCTTCAAGAGTGAGCGACGAAGAAGAAGACGGCACCAATGCTAGGAAGAAACTCAGACTCACCAAAGAACAATCTGCACTACTGGAGGAGAGCTTCAAACAACACAGCACTCTCAATCCTAAACAGAAGCAAGCTTTAGCCAGACAGTTAAATCTACGGCCTCGACAAGTTGAAGTGTGGTTTCAGAATCGGAGAGCCAGAACAAAGCTGAAGCAGACAGAGGTGGACTGTGAGTTCTTGAAGAAATGCTGTGAAACGTTGACGGACGAAAACAGAAGGTTAAAGAAGGAGCTGCAGGAGCTGAAGGCACTGAAACTAGCTCAACCCTTGTACATGCCTATGCCTGCGGCAACACTCACCATGTGCCCTTCTTGCGAGAGGCTCGGTGGCGTTAGCGATAACGCTTCCAATAAAAGTCCTTTCTCCATGGCTCCCAAGACTCACTTCTACAACCCCTTTGCCAATCCTTCTGCAGCATGTTGA 867 0.4844 MGFDHDASTSGLHLVLGLSLTATTTPSTKPQDHHHHHHHHFCVVKPSPTKPNSPNEPSLTLGLSGDSCHLAKQVPNNSKVYCEDPLDMSRQTSPHSVVSSFSTGRVVKRERDLSFEEVEAEAEAEERVSSRVSDEEEDGTNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKELQELKALKLAQPLYMPMPAATLTMCPSCERLGGVSDNASNKSPFSMAPKTHFYNPFANPSAAC 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00485 288 ProSitePatterns 'Homeobox' domain signature. 174 197 IPR017970 GO:0000981|GO:0006355
Vian10g00485 288 MobiDBLite consensus disorder prediction 24 64 - -
Vian10g00485 288 Pfam Homeodomain 143 197 IPR001356 GO:0003677
Vian10g00485 288 SMART halz 199 242 IPR003106 GO:0006355|GO:0043565
Vian10g00485 288 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 16 271 - -
Vian10g00485 288 MobiDBLite consensus disorder prediction 89 103 - -
Vian10g00485 288 Pfam Homeobox associated leucine zipper 199 233 IPR003106 GO:0006355|GO:0043565
Vian10g00485 288 MobiDBLite consensus disorder prediction 124 147 - -
Vian10g00485 288 SUPERFAMILY Homeodomain-like 141 207 IPR009057 -
Vian10g00485 288 SMART HOX_1 141 203 IPR001356 GO:0003677
Vian10g00485 288 MobiDBLite consensus disorder prediction 82 147 - -
Vian10g00485 288 Gene3D - 147 197 - -
Vian10g00485 288 FunFam Homeobox-leucine zipper protein 18 126 204 - -
Vian10g00485 288 Coils Coil 205 235 - -
Vian10g00485 288 ProSiteProfiles 'Homeobox' domain profile. 139 199 IPR001356 GO:0003677
Vian10g00485 288 CDD homeodomain 143 200 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00485 Vian-Chr10 4510525 4511913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00485 1 288 Homeobox Transcription Factor Family AT4G37790 59.333 5.13e-95 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vian10g00485 Homeodomain 1.8e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00485 10 4510525 4511913 Vian1g01543 1 17304893 17305999 PCT