Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00483 ATGTTACAAATGCAAGAAGATGGCAACTTGGTGCTCAAAGCGTACCTGTGGGCAGACCCTGCATACTGGTACACTTCACCCATAACCGCAAATATGACATTGGTGTTTAATGCTACCACTGCTCTCATGTACCGTGTCGACGGTGCTGGGAACATCTTCACCCTAACCGAAATCACTCCAACCCCGGTGGAGGATTACTATCACCGCGCTACAATAGATGAGAATGGGAATTTCCAGCAATATGCTTATCACAAGAGGAATGGGACCGGTTGGAGGAGGGTTTGGAGAGCGGAGGATCCCTGCAGAGTGAATGCTATCTGTGGTGTGTATGGCTTGTGCACTTCTCTTGACAATGAATCAATCAAGTGTGAGTGTATTCCAGGTTATATCCCTTTGGATGATCAAGATGTTTCCAAAGGGTGTCACCCACCAGCTGTCATCAATTACTGTGCAGAGAACAACTTCAAGCTCCAGGTCTTTGACGACACTGATTTCTATTTTGATACTCATCTTGTTAGCTTAGCTAGCGTTGACTTCGAAAGTTGTAAGAAGGATGTAATAGATGATTGTAACATTGTTGCTGCAACTTATGACCATTCCACCTCCACATGTGCTAAGAAGAGACTGCCCTTGCTGAATGCTAGAAATAACTCTTCTTCAAAGGGATTGAAAGCACTGCTTAAAGTTGCTAACAGGATTGAGTCTGGGACATCTGAACTTCCTAAGAAGAAAAGTTTTAATGTAAGAGTCTTTTTGAAGGTTCTTGTTGCAGTTACTGCAACTCTTGCATGTTTCTTTGGTGCACTTGCTGTCTACTATCATCCTTTCACTCGGAGACTTACAAGGAAAAAGAAGCATCTGAATGCAACAACTATTGGAATCAACTTCAGAGAATTTACCTTTCAGGAGCTGCATGAAGCAACAGACGGATTTACTAAGATTCTTGGAAAGAGAGCTTCTGGAAAAGTCTATCGTGGTTCTTTAGTAATAGGTGATGCAGAGATTGATGTTGCAGTAAAGAAACTGGAAAAGAAAATAGAGAAAAGTGATAGTGAATTCACGACCGAGCTCAAAATTATTGGTCGTACTCATCACAGAAATTTGGTGAGGCTTTTGGGGTTTTGCATTGAGAGTAGCCATCGAATTCTTGTGTATGAGTTGATGCCAAATGGTGCCCTCTCTAGTTTTTTGTTTGGAGAGGGAGAAAGGCCTCAATGGGCTCCCACACCCCACACCATATTGATTTCCGTCGACGGAACTTGCATATCCGTTAAAGGAATCCTCTCACTTGAAGCGGTGCGGCTGCAACGAACCGTAGATCTCAAAAGGAACACCACTTCTTCCCTGGGTGTCGTCGAACGGATCGAGTATGATCCTAATCGTTCTTTCGACATCGCACTCGTTCGCCGGCTACAAGGCGTCCACCACCGCCAACGTCGCGTCGGCGCTGCGGCCTGTTCGTCCAAGCTCCTAGCCCTCAATCCCACTGTCACTAACAGTGACAACATTCGTGGTGTTTAG 1521 0.4484 MLQMQEDGNLVLKAYLWADPAYWYTSPITANMTLVFNATTALMYRVDGAGNIFTLTEITPTPVEDYYHRATIDENGNFQQYAYHKRNGTGWRRVWRAEDPCRVNAICGVYGLCTSLDNESIKCECIPGYIPLDDQDVSKGCHPPAVINYCAENNFKLQVFDDTDFYFDTHLVSLASVDFESCKKDVIDDCNIVAATYDHSTSTCAKKRLPLLNARNNSSSKGLKALLKVANRIESGTSELPKKKSFNVRVFLKVLVAVTATLACFFGALAVYYHPFTRRLTRKKKHLNATTIGINFREFTFQELHEATDGFTKILGKRASGKVYRGSLVIGDAEIDVAVKKLEKKIEKSDSEFTTELKIIGRTHHRNLVRLLGFCIESSHRILVYELMPNGALSSFLFGEGERPQWAPTPHTILISVDGTCISVKGILSLEAVRLQRTVDLKRNTTSSLGVVERIEYDPNRSFDIALVRRLQGVHHRQRRVGAAACSSKLLALNPTVTNSDNIRGV 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00483 506 Gene3D - 436 479 IPR012340 -
Vian10g00483 506 SUPERFAMILY Protein kinase-like (PK-like) 301 401 IPR011009 -
Vian10g00483 506 FunFam S-receptor-like serine/threonine-protein kinase 278 387 - -
Vian10g00483 506 Pfam S-locus glycoprotein domain 65 131 IPR000858 GO:0048544
Vian10g00483 506 ProSiteProfiles Protein kinase domain profile. 309 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g00483 506 Gene3D Phosphorylase Kinase; domain 1 281 387 - -
Vian10g00483 506 SUPERFAMILY Nucleic acid-binding proteins 436 475 IPR012340 -
Vian10g00483 506 SMART tyrkin_6 309 490 IPR020635 GO:0004713|GO:0006468
Vian10g00483 506 Pfam Protein tyrosine and serine/threonine kinase 312 400 IPR001245 GO:0004672|GO:0006468
Vian10g00483 506 Gene3D - 1 99 IPR036426 -
Vian10g00483 506 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 2 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00483 Vian-Chr10 4467898 4470358 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00483 241 405 Receptor kinase-like Gene Family AT2G43700 36.970 3.45e-25 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vian10g00483 PK_Tyr_Ser-Thr 1.7e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00483 - - vum:124841710 780.015