Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00474 ATGCGTGTTCTCTTTCTATTTCTGTTTTTCCATCTTCATCAAACCCTTTCGCTGCCATTCTCAGAGTACAATGCCCTTCGCTCTATTCGTTCAGCCATTACCGATGCCATTCCACCAGTTCTCTCTTCCTGGAATGCCTCCACCTCTTACTGTTCCTGGCTCGGCGTCACATGCGATGCGCACCGCCACGTCGTCGCTCTCAACCTCACCGGACTCCACCTCTCCGGGACTCTCTCCGCCGACATAGCTCACCTCACATTCCTCTCCAATCTCTCGCTCGCCGAAAATAAGTTCTCCGGCCCCATCCCTCCGGCTCTCTCCTCCCTCTCTGCCCTCCGCCTCCTCAACCTCTCCAACAATGGCTTTAACCAAACTTTTCCCTCGGAGCTCTCGCGCCTCCAGACCCTCGAGCTTCATGGAGCAATACCGGAGTTTATAGGGGACCTTCCGTCACTGGAAGTGGTGCAACTGTGGGAAAACAACTTCACAGGTAGCATTCCTGAGGGTTTAGGCAAGAACGGGAGACTGAACGTTGTTGATCTTTCTTCTAACAAATTAACCGGGACTTTGCCTCCTTATCTCTGTTCTGGGAACACCCTTCGGACTTTGATAACTCTCGAGAATTTCTTGTTCGGTCCAATTCCGGAATCGCTTGGGAGTTGTGAATCCCTTCTTCGGATTCGAATGGGAGAGAACTTTCTAAATGGGTCCATTCCGAAAGGGCTTTTTGGACTTCCCAAACTGACCCAGGTTGAGCTTCAGGATAATTATCTATCTGGAGAGTTGCCGGAGGCGGGCTCTGTAGCTGTTAATCTTGGTCAGATAACTCTCTCCAACAATCAGCTTTCTGGGTCTTTGCCTCCTTCTATCGGTAACTTCTCCGGCGTGCAGAAGCTCCTTCTTGACGGTAACATGTTTTCTGGTCGGATACCTCCTCAGATTGGGAAGTTGCAACAGCTCTCAAAGATTGATTTTAGTGGCAACAAGTTCTCGGGTCCTATTTCACCTGAGATCAGTCAGTGTAAGTTGTTGACTTTTCTGGACCTTAGCCGCAATGAGCTTTCCGGAGAGATCCCAAATGAGATTACTGGAATGAGGATCTTGAATTACCTTAATCTCTCAAGTAATCATTTAGTGGGTAGCATTCCCTCTTCAATATCCTCGATGCAAAGCTTAACATCTGTTGATTTTTCGTACAACAATCTGTCTGGTTTGGTGCCTGGTACCGGTCAGTTCAGCTACTTCAACTACACGTCTTTCCTGGGAAACCCTGACCTCTGTGGTCCCTATTTAGGTGCTTGCAAGGATGGGGTTGCCAATGGTGCACATCAACCTCATGCCAAAGGACTCTCGTCTTCCTTGAAGCTTCTACTTGTTGTCGGTTTGCTTTTATGTTCCATTGCTTTTGCTGTGGCGGCAATATTTAAGGCTCGATCACTGAAGAAGGCCAGTGAGGCTCGTACATGGAAGTTGACTGCATTCCAACGTTTGGACTTCACTGTTGATGATGTTTTGCATTGCTTGAAGGAGGATAATATTATAGGCAAAGGAGGTGCAGGCATTGTCTACAAAGGGGCTATGCCTAACGGGGATCATGTTGCCGTGAAAAGGCTTCCCGCTATGAGTAGAGGCTCTTCCCACGACCACGGGTTCAATGCGGAGATTCAGACACTTGCCCATGTTGCTGATTTTGGGCTAGCCAAGTTCCTGCAAGATTCTGGAACATCTGAATGCATGTCTGCTATTGCTGGTTCATATGGATACATAGCTCCGGAGTATGCCTACACATTGAAAGTTGATGAAAAAAGCGACGTGTACAGTTTTGGCGTGGTTCTTTTAGAACTTGTAACTGGCAGGAAACCTGTTGGGGAATTTGGTGACGGTGTAGACATTGTGCAATGGACAAGGAAAATGACGGACTCTAGCAAGGAAGAAGTTCTTAAAGTTCTTGATCCTAGGCTTTCTTCGGTTCCCCTCCACGAAGTGATGCATGTTTTCTATGTAGCCATGCTATGTGTTGAAGAACAGGCTGTAGAGAGACCAACTATGCGTGAAGTAGTCCAAATGCTAACAGAGCTTCCAAAGCCACCTGGTTCTAAACAGGAGGACTTAACAGAATCCTCTCTGACATCATCCAATGCTTTAGAATCTCCATCCACAGCCTCTAAAGATCATCAGAATCCTTCTCAATCTCCACCAGCCGATCTTCTTAGCATCTGA 2220 0.4757 MRVLFLFLFFHLHQTLSLPFSEYNALRSIRSAITDAIPPVLSSWNASTSYCSWLGVTCDAHRHVVALNLTGLHLSGTLSADIAHLTFLSNLSLAENKFSGPIPPALSSLSALRLLNLSNNGFNQTFPSELSRLQTLELHGAIPEFIGDLPSLEVVQLWENNFTGSIPEGLGKNGRLNVVDLSSNKLTGTLPPYLCSGNTLRTLITLENFLFGPIPESLGSCESLLRIRMGENFLNGSIPKGLFGLPKLTQVELQDNYLSGELPEAGSVAVNLGQITLSNNQLSGSLPPSIGNFSGVQKLLLDGNMFSGRIPPQIGKLQQLSKIDFSGNKFSGPISPEISQCKLLTFLDLSRNELSGEIPNEITGMRILNYLNLSSNHLVGSIPSSISSMQSLTSVDFSYNNLSGLVPGTGQFSYFNYTSFLGNPDLCGPYLGACKDGVANGAHQPHAKGLSSSLKLLLVVGLLLCSIAFAVAAIFKARSLKKASEARTWKLTAFQRLDFTVDDVLHCLKEDNIIGKGGAGIVYKGAMPNGDHVAVKRLPAMSRGSSHDHGFNAEIQTLAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVTGRKPVGEFGDGVDIVQWTRKMTDSSKEEVLKVLDPRLSSVPLHEVMHVFYVAMLCVEEQAVERPTMREVVQMLTELPKPPGSKQEDLTESSLTSSNALESPSTASKDHQNPSQSPPADLLSI 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00474 739 Gene3D Ribonuclease Inhibitor 176 440 IPR032675 -
Vian10g00474 739 SMART LRR_typ_2 149 173 IPR003591 -
Vian10g00474 739 SMART LRR_typ_2 389 412 IPR003591 -
Vian10g00474 739 SMART LRR_typ_2 174 197 IPR003591 -
Vian10g00474 739 SMART LRR_typ_2 109 133 IPR003591 -
Vian10g00474 739 FunFam Leucine-rich repeat receptor-like kinase protein FLORAL ORGAN NUMBER1 21 131 - -
Vian10g00474 739 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 153 438 - -
Vian10g00474 739 SUPERFAMILY L domain-like 174 431 - -
Vian10g00474 739 MobiDBLite consensus disorder prediction 701 739 - -
Vian10g00474 739 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 65 561 - -
Vian10g00474 739 MobiDBLite consensus disorder prediction 692 739 - -
Vian10g00474 739 Gene3D Ribonuclease Inhibitor 20 168 IPR032675 -
Vian10g00474 739 Pfam Leucine rich repeat N-terminal domain 22 59 IPR013210 -
Vian10g00474 739 Pfam Protein tyrosine and serine/threonine kinase 557 690 IPR001245 GO:0004672|GO:0006468
Vian10g00474 739 Gene3D Transferase(Phosphotransferase) domain 1 475 560 - -
Vian10g00474 739 ProSiteProfiles Protein kinase domain profile. 320 693 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g00474 739 SUPERFAMILY L domain-like 21 203 - -
Vian10g00474 739 Gene3D Transferase(Phosphotransferase) domain 1 561 728 - -
Vian10g00474 739 SUPERFAMILY Protein kinase-like (PK-like) 505 706 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00474 Vian-Chr10 4375802 4379419 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00474 559 718 Receptor kinase-like Gene Family AT5G65700 83.537 9.69e-84 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vian10g00474 PK_Tyr_Ser-Thr 1.6e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00474 - - gmx:547593 806.208